Gene annotation
| Transcriptome id | Sobic.003G050400.2,Sobic.003G050400.1 |
|---|---|
| Synonym | Sb03g004390, PLD, PLDALPHA1 |
| Functional annotation | phospholipase D, putative, expressed |
| UniProt | Q8W0U6 , A0A1B6Q1F1 |
| Pfam | PF00168 PF00614 PF12357 |
| Panther DB | PTHR18896 PTHR18896:SF67 |
| NCBI CDD | - |
| KEGG Orthology | K01115; phospholipase D1/2 |
| Gene Ontology | GO:0005515; protein binding GO:0003824catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT3G15730 : phospholipase D alpha 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g07760.2 : phospholipase D, putative, expressed |
| MaizeGDB (Corn) | Zm00025a035726 , Zm00025a023249 |
| Brachypodium | KQK02930 , KQK02929 |
| Barley | HORVU1Hr1G025370.4 , HORVU1Hr1G025370.1 , HORVU1Hr1G025370.2 , HORVU1Hr1G025370.3 , HORVU3Hr1G024530.7 , HORVU3Hr1G024530.6 , HORVU3Hr1G024530.4 , HORVU3Hr1G024530.3 , HORVU3Hr1G024530.1 , HORVU3Hr1G024530.9 , HORVU3Hr1G024530.8 , HORVU3Hr1G024530.11 , HORVU3Hr1G024530.10 , HORVU3Hr1G024530.5 , HORVU3Hr1G024530.2 |
| Wheat | TraesCS3D02G130900 , TraesCS1B02G135200 , TraesCS1B02G135200 , TraesCS3B02G149100 , TraesCS1D02G116700 , TraesCS1A02G115300 , TraesCS3A02G130000 |
| Populus | - |
JBrowse
| Sobic.003G050400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G345300 | ZOS7-05 - C2H2 zinc finger protein, expressed | - |
| 2 | Sobic.010G178200 | hemoglobin-like protein HbO, putative, expressed | - |
| 3 | Sobic.003G350300 | ubiquitin-conjugating enzyme, putative, expressed | K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1 |
| 4 | Sobic.004G157000 | protein kinase domain containing protein, expressed | K13430: serine/threonine-protein kinase PBS1 |
| 5 | Sobic.009G023200 | glycine-rich protein A3, putative, expressed | - |
| 6 | Sobic.003G360000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transferase family protein, putative, expressed | - |
| 7 | Sobic.010G166500 | amino acid transporter, putative, expressed | - |
| 8 | Sobic.001G091600 | expressed protein | - |
| 9 | Sobic.009G046600 | stress-related protein, putative, expressed | - |
| 10 | Sobic.001G477600 | zinc finger protein, putative, expressed | - |
| 11 | Sobic.005G196800 | membrane protein, putative, expressed | - |
| 12 | Sobic.006G143400 | expressed protein | - |
| 13 | Sobic.001G034700 | actin-depolymerizing factor, putative, expressed | K05765: cofilin |
| 14 | Sobic.002G330000 | core histone H2A/H2B/H3/H4, putative, expressed | K11251: histone H2A |
| 15 | Sobic.009G069700 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Transcriptional repressor(PubMedID : 30367619)@OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 16 | Sobic.004G192100 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 17 | Sobic.002G046100 | zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed | - |
| 18 | Sobic.003G364300 | similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 19 | Sobic.010G205400 | ribosomal protein, putative, expressed | K02955: RP-S14e, small subunit ribosomal protein S14e |
| 20 | Sobic.010G274900 | serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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