Gene annotation
Transcriptome id Sobic.010G205400.1
Synonym Sb10g025270
Functional annotation ribosomal protein, putative, expressed
UniProt -
Pfam PF00411
Panther DB PTHR11759 PTHR11759:SF11
NCBI CDD KOG0407; 40S ribosomal protein S14
KEGG Orthology K02955; RP-S14e, small subunit ribosomal protein S14e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G52580 : Ribosomal protein S11 family protein
RAP-DB (Rice) LOC_Os02g06700.2 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a041877 , Zm00025a041876 , Zm00025a041875 , Zm00025a051381 , Zm00025a018134
Brachypodium KQJ93475 , KQJ82526 , KQK17170
Barley HORVU7Hr1G104220.4 , HORVU7Hr1G104220.5 , HORVU7Hr1G104220.2 , HORVU7Hr1G104220.3 , HORVU1Hr1G076240.1 , HORVU1Hr1G076240.2 , HORVU7Hr1G091030.1 , HORVU6Hr1G085630.1 , HORVU1Hr1G058980.1 , HORVU6Hr1G026350.1
Wheat TraesCS6A02G137300 , TraesCS2B02G312000 , TraesCS2D02G293300 , TraesCS7B02G355300 , TraesCS6D02G126300 , TraesCS2D02G293400 , TraesCS6B02G165600 , TraesCS2A02G295600
Populus -


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cDNA sequences
Sobic.010G205400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
2 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
3 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
4 Sobic.004G045400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
5 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
6 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
7 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
8 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
9 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
10 Sobic.005G188100 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
11 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
12 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
13 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
14 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
15 Sobic.006G106100 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
16 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
17 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
18 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
19 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e
20 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae


Gene co-expression network
sample Sobic010G205400 Sobic010G205400 Sobic003G408100 Sobic003G408100 Sobic010G205400--Sobic003G408100 Sobic006G047400 Sobic006G047400 Sobic010G205400--Sobic006G047400 Sobic001G054900 Sobic001G054900 Sobic010G205400--Sobic001G054900 Sobic004G045400 Sobic004G045400 Sobic010G205400--Sobic004G045400 Sobic010G206200 Sobic010G206200 Sobic010G205400--Sobic010G206200 Sobic001G036900 Sobic001G036900 Sobic010G205400--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic010G205400--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic010G205400--Sobic009G163800 Sobic009G215200 Sobic009G215200 Sobic010G205400--Sobic009G215200 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic003G408100--Sobic001G018900 Sobic003G408100--Sobic009G163800 Sobic006G116700 Sobic006G116700 Sobic003G408100--Sobic006G116700 Sobic003G408100--Sobic010G206200 Sobic009G050300 Sobic009G050300 Sobic003G408100--Sobic009G050300 Sobic003G408100--Sobic001G036900 Sobic003G408100--Sobic009G215200 Sobic009G166500 Sobic009G166500 Sobic006G047400--Sobic009G166500 Sobic001G374700 Sobic001G374700 Sobic006G047400--Sobic001G374700 Sobic006G047400--Sobic009G163800 Sobic001G493001 Sobic001G493001 Sobic006G047400--Sobic001G493001 Sobic002G175100 Sobic002G175100 Sobic006G047400--Sobic002G175100 Sobic006G047400--Sobic003G408100 Sobic001G091801 Sobic001G091801 Sobic006G047400--Sobic001G091801 Sobic001G130301 Sobic001G130301 Sobic006G047400--Sobic001G130301 Sobic006G047400--Sobic009G215200 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic007G019000 Sobic007G019000 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G054900--Sobic001G036900 Sobic001G054900--Sobic001G018900 Sobic001G054900--Sobic001G091801 Sobic004G045400--Sobic010G205400 Sobic006G158400 Sobic006G158400 Sobic004G045400--Sobic006G158400 Sobic002G042000 Sobic002G042000 Sobic004G045400--Sobic002G042000 Sobic001G054500 Sobic001G054500 Sobic004G045400--Sobic001G054500 Sobic003G364300 Sobic003G364300 Sobic004G045400--Sobic003G364300 Sobic007G008100 Sobic007G008100 Sobic004G045400--Sobic007G008100 Sobic001G361600 Sobic001G361600 Sobic004G045400--Sobic001G361600 Sobic002G040900 Sobic002G040900 Sobic004G045400--Sobic002G040900 Sobic006G159100 Sobic006G159100 Sobic004G045400--Sobic006G159100 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G251600 Sobic010G251600 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic007G019400 Sobic007G019400 Sobic010G206200--Sobic007G019400 Sobic001G036900--Sobic001G018900 Sobic001G036900--Sobic006G116700 Sobic001G036900--Sobic009G215200 Sobic001G036900--Sobic009G050300 Sobic001G036900--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic001G036900--Sobic001G016400 Sobic007G197800 Sobic007G197800 Sobic001G036900--Sobic007G197800 Sobic001G036900--Sobic003G408100 Sobic001G036900--Sobic001G054900 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic001G018900--Sobic003G408100 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700
Octagon: transcription factors


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