Gene annotation
Transcriptome id Sobic.004G045400.1
Synonym Sb04g003900
Functional annotation 60S ribosomal protein L37a, putative, expressed
UniProt -
Pfam PF01780
Panther DB -
NCBI CDD KOG0402; 60S ribosomal protein L37
KEGG Orthology K02921; RP-L37Ae, large subunit ribosomal protein L37Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G10950 : Zinc-binding ribosomal protein family protein
RAP-DB (Rice) LOC_Os05g48320.1 : 60S ribosomal protein L37a, putative, expressed
MaizeGDB (Corn) Zm00025a034869 , Zm00025a011810 , Zm00025a019019
Brachypodium KQK04962 , KQK09189
Barley HORVU7Hr1G081910.4 , HORVU7Hr1G081910.5 , HORVU7Hr1G081910.1 , HORVU3Hr1G062590.3 , HORVU3Hr1G062590.2 , HORVU3Hr1G062590.1 , HORVU3Hr1G062590.4 , HORVU7Hr1G081910.2 , HORVU7Hr1G081910.3 , HORVU1Hr1G085170.1 , HORVU1Hr1G085170.2 , HORVU1Hr1G085170.3 , HORVU1Hr1G085170.5 , HORVU1Hr1G085170.6
Wheat TraesCS1B02G413700 , TraesCS7A02G331900 , TraesCS3D02G268000 , TraesCS3A02G267900 , TraesCS3B02G302300 , TraesCS7D02G340100 , TraesCS7D02G340100 , TraesCS1D02G394700
Populus PNT44402 , PNT44403


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cDNA sequences
Sobic.004G045400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G205400 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
2 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
3 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.001G054500 expressed protein -
5 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
6 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
7 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
8 Sobic.002G040900 VQ domain containing protein, putative, expressed -
9 Sobic.006G159100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.004G148100 Cupin domain containing protein, expressed -
11 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
12 Sobic.005G213600 Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1.(PubMedID : 34525227)@sulfotransferase domain containing protein, expressed -
13 Sobic.010G156500 expressed protein -
14 Sobic.003G026400 aquaporin protein, putative, expressed K09874: aquaporin NIP
15 Sobic.007G144501 - -
16 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
17 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
18 Sobic.005G177600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
19 Sobic.003G264600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e


Gene co-expression network
sample Sobic004G045400 Sobic004G045400 Sobic010G205400 Sobic010G205400 Sobic004G045400--Sobic010G205400 Sobic006G158400 Sobic006G158400 Sobic004G045400--Sobic006G158400 Sobic002G042000 Sobic002G042000 Sobic004G045400--Sobic002G042000 Sobic001G054500 Sobic001G054500 Sobic004G045400--Sobic001G054500 Sobic003G364300 Sobic003G364300 Sobic004G045400--Sobic003G364300 Sobic007G008100 Sobic007G008100 Sobic004G045400--Sobic007G008100 Sobic001G361600 Sobic001G361600 Sobic004G045400--Sobic001G361600 Sobic002G040900 Sobic002G040900 Sobic004G045400--Sobic002G040900 Sobic006G159100 Sobic006G159100 Sobic004G045400--Sobic006G159100 Sobic003G408100 Sobic003G408100 Sobic010G205400--Sobic003G408100 Sobic006G047400 Sobic006G047400 Sobic010G205400--Sobic006G047400 Sobic001G054900 Sobic001G054900 Sobic010G205400--Sobic001G054900 Sobic010G205400--Sobic004G045400 Sobic010G206200 Sobic010G206200 Sobic010G205400--Sobic010G206200 Sobic001G036900 Sobic001G036900 Sobic010G205400--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic010G205400--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic010G205400--Sobic009G163800 Sobic009G215200 Sobic009G215200 Sobic010G205400--Sobic009G215200 Sobic008G127933 Sobic008G127933 Sobic006G158400--Sobic008G127933 Sobic008G027600 Sobic008G027600 Sobic006G158400--Sobic008G027600 Sobic001G237900 Sobic001G237900 Sobic006G158400--Sobic001G237900 Sobic010G158500 Sobic010G158500 Sobic006G158400--Sobic010G158500 Sobic007G204700 Sobic007G204700 Sobic006G158400--Sobic007G204700 Sobic003G007600 Sobic003G007600 Sobic006G158400--Sobic003G007600 Sobic010G043900 Sobic010G043900 Sobic006G158400--Sobic010G043900 Sobic001G318500 Sobic001G318500 Sobic006G158400--Sobic001G318500 Sobic003G299300 Sobic003G299300 Sobic006G158400--Sobic003G299300 Sobic002G042000--Sobic007G008100 Sobic002G042000--Sobic001G054500 Sobic002G042000--Sobic002G040900 Sobic002G042000--Sobic003G364300 Sobic009G069800 Sobic009G069800 Sobic002G042000--Sobic009G069800 Sobic001G256200 Sobic001G256200 Sobic002G042000--Sobic001G256200 Sobic006G101300 Sobic006G101300 Sobic002G042000--Sobic006G101300 Sobic004G148100 Sobic004G148100 Sobic002G042000--Sobic004G148100 Sobic007G008000 Sobic007G008000 Sobic002G042000--Sobic007G008000 Sobic001G054500--Sobic002G042000 Sobic001G054500--Sobic007G008100 Sobic001G054500--Sobic002G040900 Sobic001G054500--Sobic001G256200 Sobic001G054500--Sobic003G364300 Sobic001G054500--Sobic004G148100 Sobic006G113500 Sobic006G113500 Sobic001G054500--Sobic006G113500 Sobic001G054500--Sobic007G008000 Sobic009G009700 Sobic009G009700 Sobic001G054500--Sobic009G009700 Sobic010G156500 Sobic010G156500 Sobic003G364300--Sobic010G156500 Sobic009G231000 Sobic009G231000 Sobic003G364300--Sobic009G231000 Sobic002G338500 Sobic002G338500 Sobic003G364300--Sobic002G338500 Sobic003G364000 Sobic003G364000 Sobic003G364300--Sobic003G364000 Sobic003G364300--Sobic007G008100 Sobic003G364300--Sobic002G042000 Sobic003G382600 Sobic003G382600 Sobic003G364300--Sobic003G382600 Sobic003G364300--Sobic001G054500 Sobic002G302500 Sobic002G302500 Sobic003G364300--Sobic002G302500 Sobic007G008100--Sobic002G042000 Sobic007G008100--Sobic001G054500 Sobic004G336500 Sobic004G336500 Sobic007G008100--Sobic004G336500 Sobic007G008100--Sobic003G364300 Sobic007G008100--Sobic007G008000 Sobic007G008100--Sobic009G069800 Sobic009G154200 Sobic009G154200 Sobic007G008100--Sobic009G154200 Sobic008G139600 Sobic008G139600 Sobic007G008100--Sobic008G139600 Sobic007G008100--Sobic002G040900 Sobic001G295200 Sobic001G295200 Sobic001G361600--Sobic001G295200 Sobic005G113300 Sobic005G113300 Sobic001G361600--Sobic005G113300 Sobic006G116700 Sobic006G116700 Sobic001G361600--Sobic006G116700 Sobic001G361600--Sobic001G018900 Sobic004G220000 Sobic004G220000 Sobic001G361600--Sobic004G220000 Sobic003G078200 Sobic003G078200 Sobic001G361600--Sobic003G078200 Sobic006G141700 Sobic006G141700 Sobic001G361600--Sobic006G141700 Sobic009G188000 Sobic009G188000 Sobic001G361600--Sobic009G188000 Sobic001G361600--Sobic003G408100 Sobic002G040900--Sobic004G148100 Sobic002G040900--Sobic001G054500 Sobic002G040900--Sobic001G256200 Sobic002G040900--Sobic002G042000 Sobic002G040900--Sobic006G113500 Sobic002G040900--Sobic007G008100 Sobic005G177600 Sobic005G177600 Sobic002G040900--Sobic005G177600 Sobic006G162100 Sobic006G162100 Sobic002G040900--Sobic006G162100 Sobic007G144501 Sobic007G144501 Sobic002G040900--Sobic007G144501 Sobic006G159100--Sobic004G045400 Sobic005G213600 Sobic005G213600 Sobic006G159100--Sobic005G213600 Sobic007G195800 Sobic007G195800 Sobic006G159100--Sobic007G195800 Sobic006G159100--Sobic003G364300 Sobic010G082600 Sobic010G082600 Sobic006G159100--Sobic010G082600 Sobic006G159100--Sobic001G361600 Sobic006G159100--Sobic002G042000 Sobic006G159100--Sobic006G158400 Sobic006G159100--Sobic010G156500
Octagon: transcription factors


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