Gene annotation
Transcriptome id Sobic.004G148100.1
Synonym Sb04g019650
Functional annotation Cupin domain containing protein, expressed
UniProt C5XRU7
Pfam PF07883
Panther DB PTHR31238 PTHR31238:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05950 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os02g29000.1 : Cupin domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ99516
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G040900 VQ domain containing protein, putative, expressed -
2 Sobic.006G162100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyoxalase family protein, putative, expressed -
3 Sobic.006G113500 heavy metal associated domain containing protein, expressed -
4 Sobic.005G177600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
5 Sobic.007G215600 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
6 Sobic.001G054500 expressed protein -
7 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
8 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
9 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
10 Sobic.001G256200 expressed protein -
11 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
12 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
14 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
15 Sobic.009G231000 - -
16 Sobic.004G045400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
17 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
18 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
19 Sobic.003G087300 nuclease PA3, putative, expressed -
20 Sobic.002G004900 transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic004G148100 Sobic004G148100 Sobic002G040900 Sobic002G040900 Sobic004G148100--Sobic002G040900 Sobic006G162100 Sobic006G162100 Sobic004G148100--Sobic006G162100 Sobic006G113500 Sobic006G113500 Sobic004G148100--Sobic006G113500 Sobic005G177600 Sobic005G177600 Sobic004G148100--Sobic005G177600 Sobic007G215600 Sobic007G215600 Sobic004G148100--Sobic007G215600 Sobic001G054500 Sobic001G054500 Sobic004G148100--Sobic001G054500 Sobic006G039100 Sobic006G039100 Sobic004G148100--Sobic006G039100 Sobic002G042000 Sobic002G042000 Sobic004G148100--Sobic002G042000 Sobic007G008100 Sobic007G008100 Sobic004G148100--Sobic007G008100 Sobic002G040900--Sobic004G148100 Sobic002G040900--Sobic001G054500 Sobic001G256200 Sobic001G256200 Sobic002G040900--Sobic001G256200 Sobic002G040900--Sobic002G042000 Sobic002G040900--Sobic006G113500 Sobic002G040900--Sobic007G008100 Sobic002G040900--Sobic005G177600 Sobic002G040900--Sobic006G162100 Sobic007G144501 Sobic007G144501 Sobic002G040900--Sobic007G144501 Sobic006G162100--Sobic004G148100 Sobic006G162100--Sobic007G215600 Sobic006G162100--Sobic002G040900 Sobic004G189500 Sobic004G189500 Sobic006G162100--Sobic004G189500 Sobic006G162100--Sobic006G039100 Sobic002G055700 Sobic002G055700 Sobic006G162100--Sobic002G055700 Sobic006G162100--Sobic005G177600 Sobic006G162100--Sobic006G113500 Sobic001G325400 Sobic001G325400 Sobic006G162100--Sobic001G325400 Sobic006G113500--Sobic004G148100 Sobic006G113500--Sobic002G040900 Sobic006G113500--Sobic001G054500 Sobic006G113500--Sobic001G256200 Sobic006G113500--Sobic007G008100 Sobic006G113500--Sobic001G325400 Sobic006G113500--Sobic006G039100 Sobic006G113500--Sobic006G162100 Sobic006G113500--Sobic002G042000 Sobic005G177600--Sobic004G148100 Sobic005G177600--Sobic002G040900 Sobic005G177600--Sobic004G189500 Sobic009G231000 Sobic009G231000 Sobic005G177600--Sobic009G231000 Sobic005G177600--Sobic006G039100 Sobic004G169300 Sobic004G169300 Sobic005G177600--Sobic004G169300 Sobic002G338500 Sobic002G338500 Sobic005G177600--Sobic002G338500 Sobic005G177600--Sobic002G042000 Sobic003G418500 Sobic003G418500 Sobic005G177600--Sobic003G418500 Sobic007G215600--Sobic004G148100 Sobic007G215600--Sobic006G162100 Sobic007G215600--Sobic005G177600 Sobic001G449100 Sobic001G449100 Sobic007G215600--Sobic001G449100 Sobic007G215600--Sobic004G189500 Sobic009G145600 Sobic009G145600 Sobic007G215600--Sobic009G145600 Sobic004G148200 Sobic004G148200 Sobic007G215600--Sobic004G148200 Sobic002G369400 Sobic002G369400 Sobic007G215600--Sobic002G369400 Sobic006G154500 Sobic006G154500 Sobic007G215600--Sobic006G154500 Sobic001G054500--Sobic002G042000 Sobic001G054500--Sobic007G008100 Sobic001G054500--Sobic002G040900 Sobic001G054500--Sobic001G256200 Sobic003G364300 Sobic003G364300 Sobic001G054500--Sobic003G364300 Sobic001G054500--Sobic004G148100 Sobic001G054500--Sobic006G113500 Sobic007G008000 Sobic007G008000 Sobic001G054500--Sobic007G008000 Sobic009G009700 Sobic009G009700 Sobic001G054500--Sobic009G009700 Sobic006G039100--Sobic001G325400 Sobic006G039100--Sobic009G231000 Sobic001G462700 Sobic001G462700 Sobic006G039100--Sobic001G462700 Sobic006G039100--Sobic004G189500 Sobic003G087300 Sobic003G087300 Sobic006G039100--Sobic003G087300 Sobic002G416600 Sobic002G416600 Sobic006G039100--Sobic002G416600 Sobic002G366600 Sobic002G366600 Sobic006G039100--Sobic002G366600 Sobic006G039100--Sobic004G148100 Sobic009G077800 Sobic009G077800 Sobic006G039100--Sobic009G077800 Sobic002G042000--Sobic007G008100 Sobic002G042000--Sobic001G054500 Sobic002G042000--Sobic002G040900 Sobic002G042000--Sobic003G364300 Sobic009G069800 Sobic009G069800 Sobic002G042000--Sobic009G069800 Sobic002G042000--Sobic001G256200 Sobic006G101300 Sobic006G101300 Sobic002G042000--Sobic006G101300 Sobic002G042000--Sobic004G148100 Sobic002G042000--Sobic007G008000 Sobic007G008100--Sobic002G042000 Sobic007G008100--Sobic001G054500 Sobic004G336500 Sobic004G336500 Sobic007G008100--Sobic004G336500 Sobic007G008100--Sobic003G364300 Sobic007G008100--Sobic007G008000 Sobic007G008100--Sobic009G069800 Sobic009G154200 Sobic009G154200 Sobic007G008100--Sobic009G154200 Sobic008G139600 Sobic008G139600 Sobic007G008100--Sobic008G139600 Sobic007G008100--Sobic002G040900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.