Gene annotation
Transcriptome id Sobic.005G177600.1
Synonym ATCHIA, CHIA, Sb05g023710
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
glycosyl hydrolase, putative, expressed
UniProt C5Y5V0
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF214
NCBI CDD -
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G24090 : chitinase A
RAP-DB (Rice) LOC_Os11g47520.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a045187 , Zm00025a045186 , Zm00025a029435
Brachypodium -
Barley -
Wheat TraesCS4B02G143500 , TraesCS1B02G064600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G148100 Cupin domain containing protein, expressed -
2 Sobic.002G040900 VQ domain containing protein, putative, expressed -
3 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G231000 - -
5 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
6 Sobic.004G169300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain-containing protein, putative, expressed -
7 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
8 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
9 Sobic.003G418500 OsGrx_C6 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
10 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.009G200566 - -
12 Sobic.009G144800 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
14 Sobic.007G215600 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
15 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.006G162100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyoxalase family protein, putative, expressed -
17 Sobic.002G010900 expressed protein -
18 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
19 Sobic.008G158800 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.001G114900 - -


Gene co-expression network
sample Sobic005G177600 Sobic005G177600 Sobic004G148100 Sobic004G148100 Sobic005G177600--Sobic004G148100 Sobic002G040900 Sobic002G040900 Sobic005G177600--Sobic002G040900 Sobic004G189500 Sobic004G189500 Sobic005G177600--Sobic004G189500 Sobic009G231000 Sobic009G231000 Sobic005G177600--Sobic009G231000 Sobic006G039100 Sobic006G039100 Sobic005G177600--Sobic006G039100 Sobic004G169300 Sobic004G169300 Sobic005G177600--Sobic004G169300 Sobic002G338500 Sobic002G338500 Sobic005G177600--Sobic002G338500 Sobic002G042000 Sobic002G042000 Sobic005G177600--Sobic002G042000 Sobic003G418500 Sobic003G418500 Sobic005G177600--Sobic003G418500 Sobic004G148100--Sobic002G040900 Sobic006G162100 Sobic006G162100 Sobic004G148100--Sobic006G162100 Sobic006G113500 Sobic006G113500 Sobic004G148100--Sobic006G113500 Sobic004G148100--Sobic005G177600 Sobic007G215600 Sobic007G215600 Sobic004G148100--Sobic007G215600 Sobic001G054500 Sobic001G054500 Sobic004G148100--Sobic001G054500 Sobic004G148100--Sobic006G039100 Sobic004G148100--Sobic002G042000 Sobic007G008100 Sobic007G008100 Sobic004G148100--Sobic007G008100 Sobic002G040900--Sobic004G148100 Sobic002G040900--Sobic001G054500 Sobic001G256200 Sobic001G256200 Sobic002G040900--Sobic001G256200 Sobic002G040900--Sobic002G042000 Sobic002G040900--Sobic006G113500 Sobic002G040900--Sobic007G008100 Sobic002G040900--Sobic005G177600 Sobic002G040900--Sobic006G162100 Sobic007G144501 Sobic007G144501 Sobic002G040900--Sobic007G144501 Sobic004G148200 Sobic004G148200 Sobic004G189500--Sobic004G148200 Sobic002G055700 Sobic002G055700 Sobic004G189500--Sobic002G055700 Sobic004G189400 Sobic004G189400 Sobic004G189500--Sobic004G189400 Sobic005G091500 Sobic005G091500 Sobic004G189500--Sobic005G091500 Sobic004G189500--Sobic006G039100 Sobic003G297600 Sobic003G297600 Sobic004G189500--Sobic003G297600 Sobic005G029200 Sobic005G029200 Sobic004G189500--Sobic005G029200 Sobic004G189500--Sobic009G231000 Sobic010G213700 Sobic010G213700 Sobic004G189500--Sobic010G213700 Sobic003G364300 Sobic003G364300 Sobic009G231000--Sobic003G364300 Sobic010G259600 Sobic010G259600 Sobic009G231000--Sobic010G259600 Sobic001G325400 Sobic001G325400 Sobic009G231000--Sobic001G325400 Sobic009G231000--Sobic006G039100 Sobic002G125700 Sobic002G125700 Sobic009G231000--Sobic002G125700 Sobic009G231000--Sobic002G055700 Sobic003G087300 Sobic003G087300 Sobic009G231000--Sobic003G087300 Sobic009G231000--Sobic003G297600 Sobic010G156500 Sobic010G156500 Sobic009G231000--Sobic010G156500 Sobic006G039100--Sobic001G325400 Sobic006G039100--Sobic009G231000 Sobic001G462700 Sobic001G462700 Sobic006G039100--Sobic001G462700 Sobic006G039100--Sobic004G189500 Sobic006G039100--Sobic003G087300 Sobic002G416600 Sobic002G416600 Sobic006G039100--Sobic002G416600 Sobic002G366600 Sobic002G366600 Sobic006G039100--Sobic002G366600 Sobic006G039100--Sobic004G148100 Sobic009G077800 Sobic009G077800 Sobic006G039100--Sobic009G077800 Sobic008G066200 Sobic008G066200 Sobic004G169300--Sobic008G066200 Sobic009G200566 Sobic009G200566 Sobic004G169300--Sobic009G200566 Sobic008G139600 Sobic008G139600 Sobic004G169300--Sobic008G139600 Sobic010G166500 Sobic010G166500 Sobic004G169300--Sobic010G166500 Sobic008G158800 Sobic008G158800 Sobic004G169300--Sobic008G158800 Sobic006G101300 Sobic006G101300 Sobic004G169300--Sobic006G101300 Sobic009G145700 Sobic009G145700 Sobic004G169300--Sobic009G145700 Sobic001G280800 Sobic001G280800 Sobic004G169300--Sobic001G280800 Sobic002G323300 Sobic002G323300 Sobic004G169300--Sobic002G323300 Sobic003G043600 Sobic003G043600 Sobic002G338500--Sobic003G043600 Sobic003G382600 Sobic003G382600 Sobic002G338500--Sobic003G382600 Sobic002G338500--Sobic002G055700 Sobic002G338500--Sobic010G156500 Sobic002G338500--Sobic003G364300 Sobic009G145500 Sobic009G145500 Sobic002G338500--Sobic009G145500 Sobic002G338500--Sobic009G145700 Sobic002G353900 Sobic002G353900 Sobic002G338500--Sobic002G353900 Sobic005G196800 Sobic005G196800 Sobic002G338500--Sobic005G196800 Sobic002G042000--Sobic007G008100 Sobic002G042000--Sobic001G054500 Sobic002G042000--Sobic002G040900 Sobic002G042000--Sobic003G364300 Sobic009G069800 Sobic009G069800 Sobic002G042000--Sobic009G069800 Sobic002G042000--Sobic001G256200 Sobic002G042000--Sobic006G101300 Sobic002G042000--Sobic004G148100 Sobic007G008000 Sobic007G008000 Sobic002G042000--Sobic007G008000 Sobic003G418500--Sobic002G042000 Sobic003G418500--Sobic006G101300 Sobic003G418500--Sobic005G177600 Sobic003G418500--Sobic008G158800 Sobic006G234900 Sobic006G234900 Sobic003G418500--Sobic006G234900 Sobic003G418500--Sobic004G169300 Sobic003G418500--Sobic003G364300 Sobic003G418500--Sobic010G156500 Sobic002G010900 Sobic002G010900 Sobic003G418500--Sobic002G010900
Octagon: transcription factors


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