Gene annotation
Transcriptome id Sobic.009G069700.1
Synonym SbIAA20;AUX/IAA gene family, Sb09g005830, auxin/indole-3-acetic acid (Aux/IAA), IAA26, PAP1
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
Transcriptional repressor (PubMedID : 30367619)
OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt C5YUA0
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF33
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G16500 : phytochrome-associated protein 1
RAP-DB (Rice) LOC_Os05g09480.1 : OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a043088 , Zm00025a023057 , Zm00025a037520
Brachypodium KQK03106 , KQK07154 , KQK07152 , KQK07153 , KQK07151
Barley HORVU3Hr1G019750.3 , HORVU3Hr1G019750.2 , HORVU3Hr1G019750.7 , HORVU3Hr1G019750.6 , HORVU3Hr1G019750.5 , HORVU3Hr1G019750.4 , HORVU3Hr1G019750.9 , HORVU3Hr1G019750.8 , HORVU1Hr1G028170.11 , HORVU1Hr1G028170.10 , HORVU3Hr1G019750.10 , HORVU1Hr1G028170.1 , HORVU1Hr1G028170.3 , HORVU1Hr1G028170.2 , HORVU1Hr1G028170.5 , HORVU1Hr1G028170.4 , HORVU1Hr1G028170.7 , HORVU1Hr1G028170.6 , HORVU1Hr1G028170.9 , HORVU1Hr1G028170.8
Wheat TraesCS3A02G108400 , TraesCS1D02G123500 , TraesCS1D02G123500 , TraesCS3B02G127400 , TraesCS3D02G110200 , TraesCS1A02G122600 , TraesCS1A02G122600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
2 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
3 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
4 Sobic.004G169300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain-containing protein, putative, expressed -
5 Sobic.003G360000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transferase family protein, putative, expressed -
6 Sobic.010G036800 expressed protein -
7 Sobic.003G264500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.001G407800 leucoanthocyanidin dioxygenase, putative, expressed -
9 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
10 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
11 Sobic.005G196800 membrane protein, putative, expressed -
12 Sobic.006G101100 expressed protein -
13 Sobic.010G259300 transferase family protein, putative, expressed -
14 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.001G477600 zinc finger protein, putative, expressed -
16 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.002G356101 - -
18 Sobic.010G166500 amino acid transporter, putative, expressed -
19 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
20 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G069700 Sobic009G069700 Sobic003G158500 Sobic003G158500 Sobic009G069700--Sobic003G158500 Sobic008G139600 Sobic008G139600 Sobic009G069700--Sobic008G139600 Sobic001G247300 Sobic001G247300 Sobic009G069700--Sobic001G247300 Sobic004G169300 Sobic004G169300 Sobic009G069700--Sobic004G169300 Sobic003G360000 Sobic003G360000 Sobic009G069700--Sobic003G360000 Sobic010G036800 Sobic010G036800 Sobic009G069700--Sobic010G036800 Sobic003G264500 Sobic003G264500 Sobic009G069700--Sobic003G264500 Sobic001G407800 Sobic001G407800 Sobic009G069700--Sobic001G407800 Sobic007G151100 Sobic007G151100 Sobic009G069700--Sobic007G151100 Sobic001G040200 Sobic001G040200 Sobic003G158500--Sobic001G040200 Sobic002G140300 Sobic002G140300 Sobic003G158500--Sobic002G140300 Sobic002G245100 Sobic002G245100 Sobic003G158500--Sobic002G245100 Sobic010G259300 Sobic010G259300 Sobic003G158500--Sobic010G259300 Sobic003G158500--Sobic001G407800 Sobic002G356101 Sobic002G356101 Sobic003G158500--Sobic002G356101 Sobic003G158500--Sobic007G151100 Sobic003G430400 Sobic003G430400 Sobic003G158500--Sobic003G430400 Sobic001G538866 Sobic001G538866 Sobic003G158500--Sobic001G538866 Sobic006G054800 Sobic006G054800 Sobic008G139600--Sobic006G054800 Sobic004G321300 Sobic004G321300 Sobic008G139600--Sobic004G321300 Sobic001G112200 Sobic001G112200 Sobic008G139600--Sobic001G112200 Sobic004G237800 Sobic004G237800 Sobic008G139600--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic008G139600--Sobic009G145700 Sobic002G055700 Sobic002G055700 Sobic008G139600--Sobic002G055700 Sobic009G184000 Sobic009G184000 Sobic008G139600--Sobic009G184000 Sobic003G043500 Sobic003G043500 Sobic008G139600--Sobic003G043500 Sobic009G145600 Sobic009G145600 Sobic008G139600--Sobic009G145600 Sobic005G196800 Sobic005G196800 Sobic001G247300--Sobic005G196800 Sobic003G043600 Sobic003G043600 Sobic001G247300--Sobic003G043600 Sobic003G092900 Sobic003G092900 Sobic001G247300--Sobic003G092900 Sobic001G247300--Sobic004G237800 Sobic001G247300--Sobic009G184000 Sobic006G183400 Sobic006G183400 Sobic001G247300--Sobic006G183400 Sobic002G338500 Sobic002G338500 Sobic001G247300--Sobic002G338500 Sobic007G074000 Sobic007G074000 Sobic001G247300--Sobic007G074000 Sobic003G382600 Sobic003G382600 Sobic001G247300--Sobic003G382600 Sobic008G066200 Sobic008G066200 Sobic004G169300--Sobic008G066200 Sobic009G200566 Sobic009G200566 Sobic004G169300--Sobic009G200566 Sobic004G169300--Sobic008G139600 Sobic010G166500 Sobic010G166500 Sobic004G169300--Sobic010G166500 Sobic008G158800 Sobic008G158800 Sobic004G169300--Sobic008G158800 Sobic006G101300 Sobic006G101300 Sobic004G169300--Sobic006G101300 Sobic004G169300--Sobic009G145700 Sobic001G280800 Sobic001G280800 Sobic004G169300--Sobic001G280800 Sobic002G323300 Sobic002G323300 Sobic004G169300--Sobic002G323300 Sobic007G197600 Sobic007G197600 Sobic003G360000--Sobic007G197600 Sobic006G157500 Sobic006G157500 Sobic003G360000--Sobic006G157500 Sobic002G330000 Sobic002G330000 Sobic003G360000--Sobic002G330000 Sobic003G360000--Sobic001G247300 Sobic003G265200 Sobic003G265200 Sobic003G360000--Sobic003G265200 Sobic003G360000--Sobic005G196800 Sobic003G360000--Sobic009G069700 Sobic003G360000--Sobic008G139600 Sobic003G048000 Sobic003G048000 Sobic003G360000--Sobic003G048000 Sobic006G101100 Sobic006G101100 Sobic010G036800--Sobic006G101100 Sobic010G036800--Sobic009G069700 Sobic010G036800--Sobic001G247300 Sobic010G036800--Sobic003G158500 Sobic010G036800--Sobic010G259300 Sobic006G240600 Sobic006G240600 Sobic010G036800--Sobic006G240600 Sobic010G078600 Sobic010G078600 Sobic010G036800--Sobic010G078600 Sobic010G036800--Sobic003G092900 Sobic003G313100 Sobic003G313100 Sobic010G036800--Sobic003G313100 Sobic004G208700 Sobic004G208700 Sobic003G264500--Sobic004G208700 Sobic009G159400 Sobic009G159400 Sobic003G264500--Sobic009G159400 Sobic003G264500--Sobic006G183400 Sobic002G359300 Sobic002G359300 Sobic003G264500--Sobic002G359300 Sobic003G037800 Sobic003G037800 Sobic003G264500--Sobic003G037800 Sobic003G264500--Sobic004G237800 Sobic007G155000 Sobic007G155000 Sobic003G264500--Sobic007G155000 Sobic003G264500--Sobic001G247300 Sobic003G264500--Sobic007G074000 Sobic002G333400 Sobic002G333400 Sobic001G407800--Sobic002G333400 Sobic009G036100 Sobic009G036100 Sobic001G407800--Sobic009G036100 Sobic006G056400 Sobic006G056400 Sobic001G407800--Sobic006G056400 Sobic001G407800--Sobic004G237800 Sobic001G407800--Sobic007G074000 Sobic005G186100 Sobic005G186100 Sobic001G407800--Sobic005G186100 Sobic001G407800--Sobic010G259300 Sobic003G369100 Sobic003G369100 Sobic001G407800--Sobic003G369100 Sobic001G407800--Sobic008G139600 Sobic001G516600 Sobic001G516600 Sobic007G151100--Sobic001G516600 Sobic007G151100--Sobic003G158500 Sobic007G151100--Sobic002G356101 Sobic007G151100--Sobic001G538866 Sobic005G028700 Sobic005G028700 Sobic007G151100--Sobic005G028700 Sobic007G151100--Sobic002G140300 Sobic007G151100--Sobic002G245100 Sobic001G513700 Sobic001G513700 Sobic007G151100--Sobic001G513700 Sobic002G036100 Sobic002G036100 Sobic007G151100--Sobic002G036100
Octagon: transcription factors


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