Gene annotation
Transcriptome id Sobic.004G192100.1
Synonym Sb04g024020, PCR2
Functional annotation uncharacterized Cys-rich domain containing protein, putative, expressed
UniProt C5XVR6
Pfam PF04749
Panther DB PTHR15907 PTHR15907:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14870 : PLANT CADMIUM RESISTANCE 2
RAP-DB (Rice) LOC_Os02g36940.1 : uncharacterized Cys-rich domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031750
Brachypodium KQK00038
Barley HORVU6Hr1G078660.2 , HORVU6Hr1G078660.6 , HORVU6Hr1G078660.4
Wheat TraesCS5B02G507700 , TraesCS1B02G418800 , TraesCS1D02G398700 , TraesCS1A02G390500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
2 Sobic.009G077800 expressed protein -
3 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
4 Sobic.001G091600 expressed protein -
5 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
6 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
7 Sobic.007G025500 amino acid transporter, putative, expressed -
8 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
9 Sobic.002G004900 transporter family protein, putative, expressed -
10 Sobic.003G087300 nuclease PA3, putative, expressed -
11 Sobic.002G139300 AP2 domain containing protein, expressed -
12 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
14 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
15 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
16 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.009G139400 expressed protein -
18 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
19 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
20 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G192100 Sobic004G192100 Sobic010G052700 Sobic010G052700 Sobic004G192100--Sobic010G052700 Sobic009G077800 Sobic009G077800 Sobic004G192100--Sobic009G077800 Sobic009G221400 Sobic009G221400 Sobic004G192100--Sobic009G221400 Sobic001G091600 Sobic001G091600 Sobic004G192100--Sobic001G091600 Sobic003G297600 Sobic003G297600 Sobic004G192100--Sobic003G297600 Sobic002G353900 Sobic002G353900 Sobic004G192100--Sobic002G353900 Sobic007G025500 Sobic007G025500 Sobic004G192100--Sobic007G025500 Sobic002G302500 Sobic002G302500 Sobic004G192100--Sobic002G302500 Sobic002G004900 Sobic002G004900 Sobic004G192100--Sobic002G004900 Sobic001G503100 Sobic001G503100 Sobic010G052700--Sobic001G503100 Sobic003G087300 Sobic003G087300 Sobic010G052700--Sobic003G087300 Sobic001G333400 Sobic001G333400 Sobic010G052700--Sobic001G333400 Sobic003G280200 Sobic003G280200 Sobic010G052700--Sobic003G280200 Sobic007G141500 Sobic007G141500 Sobic010G052700--Sobic007G141500 Sobic005G011200 Sobic005G011200 Sobic010G052700--Sobic005G011200 Sobic003G364000 Sobic003G364000 Sobic010G052700--Sobic003G364000 Sobic010G052700--Sobic002G004900 Sobic002G125700 Sobic002G125700 Sobic010G052700--Sobic002G125700 Sobic009G077800--Sobic003G297600 Sobic009G139400 Sobic009G139400 Sobic009G077800--Sobic009G139400 Sobic003G393700 Sobic003G393700 Sobic009G077800--Sobic003G393700 Sobic001G070800 Sobic001G070800 Sobic009G077800--Sobic001G070800 Sobic002G055700 Sobic002G055700 Sobic009G077800--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic009G077800--Sobic002G017800 Sobic005G029200 Sobic005G029200 Sobic009G077800--Sobic005G029200 Sobic001G325400 Sobic001G325400 Sobic009G077800--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic009G077800--Sobic007G087200 Sobic009G221400--Sobic002G353900 Sobic003G041600 Sobic003G041600 Sobic009G221400--Sobic003G041600 Sobic006G158600 Sobic006G158600 Sobic009G221400--Sobic006G158600 Sobic008G044300 Sobic008G044300 Sobic009G221400--Sobic008G044300 Sobic002G336600 Sobic002G336600 Sobic009G221400--Sobic002G336600 Sobic001G477600 Sobic001G477600 Sobic009G221400--Sobic001G477600 Sobic004G208700 Sobic004G208700 Sobic009G221400--Sobic004G208700 Sobic009G070400 Sobic009G070400 Sobic009G221400--Sobic009G070400 Sobic002G192000 Sobic002G192000 Sobic009G221400--Sobic002G192000 Sobic001G091600--Sobic003G041600 Sobic003G364300 Sobic003G364300 Sobic001G091600--Sobic003G364300 Sobic006G143400 Sobic006G143400 Sobic001G091600--Sobic006G143400 Sobic001G091600--Sobic004G192100 Sobic010G156500 Sobic010G156500 Sobic001G091600--Sobic010G156500 Sobic001G091600--Sobic003G364000 Sobic001G091600--Sobic007G025500 Sobic005G005600 Sobic005G005600 Sobic001G091600--Sobic005G005600 Sobic010G166500 Sobic010G166500 Sobic001G091600--Sobic010G166500 Sobic003G297600--Sobic009G077800 Sobic003G297600--Sobic009G139400 Sobic003G297600--Sobic001G070800 Sobic003G297600--Sobic005G029200 Sobic004G189400 Sobic004G189400 Sobic003G297600--Sobic004G189400 Sobic008G050600 Sobic008G050600 Sobic003G297600--Sobic008G050600 Sobic001G317200 Sobic001G317200 Sobic003G297600--Sobic001G317200 Sobic005G091500 Sobic005G091500 Sobic003G297600--Sobic005G091500 Sobic003G297600--Sobic002G055700 Sobic002G353900--Sobic002G055700 Sobic003G382600 Sobic003G382600 Sobic002G353900--Sobic003G382600 Sobic001G367600 Sobic001G367600 Sobic002G353900--Sobic001G367600 Sobic002G353900--Sobic002G302500 Sobic002G353900--Sobic002G192000 Sobic002G353900--Sobic009G221400 Sobic002G353900--Sobic009G139400 Sobic002G353900--Sobic006G158600 Sobic009G234100 Sobic009G234100 Sobic002G353900--Sobic009G234100 Sobic002G034800 Sobic002G034800 Sobic007G025500--Sobic002G034800 Sobic001G119400 Sobic001G119400 Sobic007G025500--Sobic001G119400 Sobic007G025500--Sobic003G297600 Sobic002G366600 Sobic002G366600 Sobic007G025500--Sobic002G366600 Sobic007G025500--Sobic009G139400 Sobic010G066700 Sobic010G066700 Sobic007G025500--Sobic010G066700 Sobic009G183400 Sobic009G183400 Sobic007G025500--Sobic009G183400 Sobic007G025500--Sobic009G077800 Sobic010G136000 Sobic010G136000 Sobic007G025500--Sobic010G136000 Sobic002G302500--Sobic002G353900 Sobic002G302500--Sobic002G017800 Sobic002G302500--Sobic009G077800 Sobic002G302500--Sobic002G055700 Sobic001G318500 Sobic001G318500 Sobic002G302500--Sobic001G318500 Sobic002G338500 Sobic002G338500 Sobic002G302500--Sobic002G338500 Sobic002G302500--Sobic010G156500 Sobic002G302500--Sobic003G364300 Sobic002G302500--Sobic002G004900 Sobic002G004900--Sobic001G318500 Sobic008G172600 Sobic008G172600 Sobic002G004900--Sobic008G172600 Sobic002G004900--Sobic002G017800 Sobic002G004900--Sobic003G280200 Sobic002G004900--Sobic001G503100 Sobic002G004900--Sobic002G302500 Sobic009G009600 Sobic009G009600 Sobic002G004900--Sobic009G009600 Sobic002G004900--Sobic001G325400 Sobic002G004900--Sobic005G011200
Octagon: transcription factors


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