Gene annotation
Transcriptome id Sobic.010G260100.1
Synonym Sb10g029650
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5Z9E2
Pfam PF01248
Panther DB PTHR11449
NCBI CDD KOG2988; 60S ribosomal protein L30
KEGG Orthology K02908; RP-L30e, large subunit ribosomal protein L30e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G36240 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os01g16890.1 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) Zm00025a018446 , Zm00025a035212
Brachypodium KQK05672 , KQK03884
Barley HORVU1Hr1G068640.3 , HORVU1Hr1G068640.2 , HORVU1Hr1G068640.1 , HORVU0Hr1G023290.1
Wheat TraesCS3A02G187900 , TraesCS3D02G191800 , TraesCS3B02G217500 , TraesCS1A02G307400 , TraesCS7B02G399800 , TraesCS7D02G480000 , TraesCS7D02G480000 , TraesCS1D02G306800
Populus -


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cDNA sequences
Sobic.010G260100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
2 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
3 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
4 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
5 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
6 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
7 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
8 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
9 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
10 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
11 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
12 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
13 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
14 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
15 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
16 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
17 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
18 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
19 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
20 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e


Gene co-expression network
sample Sobic010G260100 Sobic010G260100 Sobic010G259900 Sobic010G259900 Sobic010G260100--Sobic010G259900 Sobic007G212600 Sobic007G212600 Sobic010G260100--Sobic007G212600 Sobic003G321700 Sobic003G321700 Sobic010G260100--Sobic003G321700 Sobic004G104300 Sobic004G104300 Sobic010G260100--Sobic004G104300 Sobic003G322400 Sobic003G322400 Sobic010G260100--Sobic003G322400 Sobic001G046300 Sobic001G046300 Sobic010G260100--Sobic001G046300 Sobic001G091801 Sobic001G091801 Sobic010G260100--Sobic001G091801 Sobic004G103800 Sobic004G103800 Sobic010G260100--Sobic004G103800 Sobic001G046100 Sobic001G046100 Sobic010G260100--Sobic001G046100 Sobic010G259900--Sobic010G260100 Sobic010G259900--Sobic004G104300 Sobic010G259900--Sobic003G322400 Sobic010G259900--Sobic007G212600 Sobic010G259900--Sobic004G103800 Sobic010G259900--Sobic003G321700 Sobic007G018300 Sobic007G018300 Sobic010G259900--Sobic007G018300 Sobic010G259900--Sobic001G091801 Sobic010G259900--Sobic001G046300 Sobic007G212600--Sobic001G091801 Sobic007G212600--Sobic003G322400 Sobic001G374700 Sobic001G374700 Sobic007G212600--Sobic001G374700 Sobic009G166500 Sobic009G166500 Sobic007G212600--Sobic009G166500 Sobic001G016400 Sobic001G016400 Sobic007G212600--Sobic001G016400 Sobic007G212600--Sobic003G321700 Sobic004G104100 Sobic004G104100 Sobic007G212600--Sobic004G104100 Sobic007G212600--Sobic010G260100 Sobic009G050300 Sobic009G050300 Sobic007G212600--Sobic009G050300 Sobic003G321700--Sobic007G212600 Sobic003G321700--Sobic010G260100 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G321700--Sobic003G322400 Sobic003G321700--Sobic010G259900 Sobic004G145801 Sobic004G145801 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic003G321700--Sobic004G104100 Sobic004G104300--Sobic004G103800 Sobic004G104300--Sobic004G104100 Sobic004G104300--Sobic010G259900 Sobic010G230700 Sobic010G230700 Sobic004G104300--Sobic010G230700 Sobic003G408100 Sobic003G408100 Sobic004G104300--Sobic003G408100 Sobic004G104300--Sobic007G018300 Sobic004G104300--Sobic001G091801 Sobic004G104300--Sobic003G322400 Sobic005G019700 Sobic005G019700 Sobic004G104300--Sobic005G019700 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic003G322400--Sobic007G212600 Sobic006G116700 Sobic006G116700 Sobic003G322400--Sobic006G116700 Sobic001G054900 Sobic001G054900 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic001G046300--Sobic007G212600 Sobic001G046300--Sobic004G103800 Sobic001G046300--Sobic001G091801 Sobic002G364100 Sobic002G364100 Sobic001G046300--Sobic002G364100 Sobic002G259000 Sobic002G259000 Sobic001G046300--Sobic002G259000 Sobic001G046300--Sobic004G104100 Sobic001G011200 Sobic001G011200 Sobic001G046300--Sobic001G011200 Sobic001G046300--Sobic004G104300 Sobic009G163800 Sobic009G163800 Sobic001G046300--Sobic009G163800 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic004G103800--Sobic007G018300 Sobic001G046100--Sobic001G374700 Sobic001G390300 Sobic001G390300 Sobic001G046100--Sobic001G390300 Sobic001G402050 Sobic001G402050 Sobic001G046100--Sobic001G402050 Sobic001G046100--Sobic002G175100 Sobic001G046100--Sobic003G322400 Sobic006G047400 Sobic006G047400 Sobic001G046100--Sobic006G047400 Sobic007G197800 Sobic007G197800 Sobic001G046100--Sobic007G197800 Sobic001G177800 Sobic001G177800 Sobic001G046100--Sobic001G177800 Sobic001G046100--Sobic001G091801
Octagon: transcription factors


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