Gene annotation
Transcriptome id Sobic.001G115300.4,Sobic.001G115300.2,Sobic.001G115300.5,Sobic.001G115300.3
Synonym Sb01g010170
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5S594 , A0A1Z5S5S6
Pfam PF00076
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G17720 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g50560.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016955 , Zm00025a007879
Brachypodium KQK13530
Barley -
Wheat TraesCS4A02G265800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G323300 ankyrin repeat family protein, putative, expressed -
2 Sobic.006G137800 expressed protein -
3 Sobic.009G231000 - -
4 Sobic.007G195800 uncharacterized protein family UPF0016 domain containing protein, expressed -
5 Sobic.002G366600 expressed protein -
6 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
7 Sobic.003G357100 phosphatidic acid phosphatase-related, putative, expressed -
8 Sobic.002G329800 expressed protein -
9 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
10 Sobic.001G139100 expressed protein -
11 Sobic.002G355700 histone H3, putative, expressed K11253: histone H3
12 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
13 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
14 Sobic.008G106700 isoflavone reductase, putative, expressed -
15 Sobic.009G229000 expressed protein -
16 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
17 Sobic.001G070800 expressed protein -
18 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
19 Sobic.006G249300 expressed protein -
20 Sobic.003G027400 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G115300 Sobic001G115300 Sobic002G323300 Sobic002G323300 Sobic001G115300--Sobic002G323300 Sobic006G137800 Sobic006G137800 Sobic001G115300--Sobic006G137800 Sobic009G231000 Sobic009G231000 Sobic001G115300--Sobic009G231000 Sobic007G195800 Sobic007G195800 Sobic001G115300--Sobic007G195800 Sobic002G366600 Sobic002G366600 Sobic001G115300--Sobic002G366600 Sobic002G389400 Sobic002G389400 Sobic001G115300--Sobic002G389400 Sobic003G357100 Sobic003G357100 Sobic001G115300--Sobic003G357100 Sobic002G329800 Sobic002G329800 Sobic001G115300--Sobic002G329800 Sobic003G367200 Sobic003G367200 Sobic001G115300--Sobic003G367200 Sobic009G069800 Sobic009G069800 Sobic002G323300--Sobic009G069800 Sobic004G336500 Sobic004G336500 Sobic002G323300--Sobic004G336500 Sobic002G323300--Sobic001G115300 Sobic002G323300--Sobic002G389400 Sobic004G169300 Sobic004G169300 Sobic002G323300--Sobic004G169300 Sobic010G166500 Sobic010G166500 Sobic002G323300--Sobic010G166500 Sobic002G323300--Sobic003G367200 Sobic001G280800 Sobic001G280800 Sobic002G323300--Sobic001G280800 Sobic004G321300 Sobic004G321300 Sobic002G323300--Sobic004G321300 Sobic009G159400 Sobic009G159400 Sobic006G137800--Sobic009G159400 Sobic008G025600 Sobic008G025600 Sobic006G137800--Sobic008G025600 Sobic006G137800--Sobic004G321300 Sobic001G140900 Sobic001G140900 Sobic006G137800--Sobic001G140900 Sobic002G200600 Sobic002G200600 Sobic006G137800--Sobic002G200600 Sobic001G038900 Sobic001G038900 Sobic006G137800--Sobic001G038900 Sobic008G050600 Sobic008G050600 Sobic006G137800--Sobic008G050600 Sobic006G159600 Sobic006G159600 Sobic006G137800--Sobic006G159600 Sobic003G345100 Sobic003G345100 Sobic006G137800--Sobic003G345100 Sobic003G364300 Sobic003G364300 Sobic009G231000--Sobic003G364300 Sobic010G259600 Sobic010G259600 Sobic009G231000--Sobic010G259600 Sobic001G325400 Sobic001G325400 Sobic009G231000--Sobic001G325400 Sobic006G039100 Sobic006G039100 Sobic009G231000--Sobic006G039100 Sobic002G125700 Sobic002G125700 Sobic009G231000--Sobic002G125700 Sobic002G055700 Sobic002G055700 Sobic009G231000--Sobic002G055700 Sobic003G087300 Sobic003G087300 Sobic009G231000--Sobic003G087300 Sobic003G297600 Sobic003G297600 Sobic009G231000--Sobic003G297600 Sobic010G156500 Sobic010G156500 Sobic009G231000--Sobic010G156500 Sobic007G195800--Sobic006G137800 Sobic008G139600 Sobic008G139600 Sobic007G195800--Sobic008G139600 Sobic001G502900 Sobic001G502900 Sobic007G195800--Sobic001G502900 Sobic007G195800--Sobic002G389400 Sobic006G191800 Sobic006G191800 Sobic007G195800--Sobic006G191800 Sobic007G195800--Sobic002G323300 Sobic004G065500 Sobic004G065500 Sobic007G195800--Sobic004G065500 Sobic007G195800--Sobic001G115300 Sobic005G113300 Sobic005G113300 Sobic007G195800--Sobic005G113300 Sobic010G213700 Sobic010G213700 Sobic002G366600--Sobic010G213700 Sobic009G077800 Sobic009G077800 Sobic002G366600--Sobic009G077800 Sobic009G139400 Sobic009G139400 Sobic002G366600--Sobic009G139400 Sobic007G184600 Sobic007G184600 Sobic002G366600--Sobic007G184600 Sobic002G366600--Sobic003G297600 Sobic002G017800 Sobic002G017800 Sobic002G366600--Sobic002G017800 Sobic002G366600--Sobic002G055700 Sobic002G366600--Sobic009G231000 Sobic005G183100 Sobic005G183100 Sobic002G366600--Sobic005G183100 Sobic001G112200 Sobic001G112200 Sobic002G389400--Sobic001G112200 Sobic009G184000 Sobic009G184000 Sobic002G389400--Sobic009G184000 Sobic004G171400 Sobic004G171400 Sobic002G389400--Sobic004G171400 Sobic002G389400--Sobic003G367200 Sobic002G389400--Sobic004G321300 Sobic010G225251 Sobic010G225251 Sobic002G389400--Sobic010G225251 Sobic002G389400--Sobic004G336500 Sobic002G389400--Sobic010G166500 Sobic001G138600 Sobic001G138600 Sobic002G389400--Sobic001G138600 Sobic001G389000 Sobic001G389000 Sobic003G357100--Sobic001G389000 Sobic005G103300 Sobic005G103300 Sobic003G357100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic003G357100--Sobic001G516600 Sobic003G357100--Sobic009G159400 Sobic003G357100--Sobic001G115300 Sobic002G082600 Sobic002G082600 Sobic003G357100--Sobic002G082600 Sobic002G104900 Sobic002G104900 Sobic003G357100--Sobic002G104900 Sobic009G179900 Sobic009G179900 Sobic003G357100--Sobic009G179900 Sobic001G119000 Sobic001G119000 Sobic003G357100--Sobic001G119000 Sobic002G203700 Sobic002G203700 Sobic002G329800--Sobic002G203700 Sobic004G203700 Sobic004G203700 Sobic002G329800--Sobic004G203700 Sobic002G329800--Sobic002G389400 Sobic003G084400 Sobic003G084400 Sobic002G329800--Sobic003G084400 Sobic002G329800--Sobic010G156500 Sobic002G329800--Sobic009G231000 Sobic002G329800--Sobic005G183100 Sobic002G329800--Sobic009G159400 Sobic002G329800--Sobic010G213700 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G382800 Sobic003G382800 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic003G367200--Sobic001G140900 Sobic003G369100 Sobic003G369100 Sobic003G367200--Sobic003G369100
Octagon: transcription factors


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