Gene annotation
| Transcriptome id | Sobic.002G355700.1 |
|---|---|
| Synonym | Sb02g037720 |
| Functional annotation | histone H3, putative, expressed |
| UniProt | A0A1B6QF80 |
| Pfam | PF00125 |
| Panther DB | PTHR11426 |
| NCBI CDD | KOG1745; Histones H3 and H4 |
| KEGG Orthology | K11253; histone H3 |
| Gene Ontology | GO:0003677; DNA binding GO:0000786nucleosome |
Orthologs (automatic annotation)
| TAIR | AT4G40030 : Histone superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g04030.1 : histone H3, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | KQJ82897 |
| Barley | HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU5Hr1G109790.1 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.7 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4 |
| Wheat | TraesCS2D02G316700 , TraesCS3D02G103500 , TraesCS2B02G337200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G231000 | - | - |
| 2 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 3 | Sobic.002G415100 | POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 4 | Sobic.002G034800 | - | - |
| 5 | Sobic.004G205100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase |
| 6 | Sobic.002G125700 | similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 7 | Sobic.003G087300 | nuclease PA3, putative, expressed | - |
| 8 | Sobic.010G239300 | oryzain beta chain precursor, putative, expressed | - |
| 9 | Sobic.001G115300 | RNA recognition motif containing protein, putative, expressed | - |
| 10 | Sobic.003G280200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.010G259600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed | - |
| 12 | Sobic.003G255200 | expressed protein | - |
| 13 | Sobic.003G364300 | similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 14 | Sobic.005G183100 | sulfotransferase domain containing protein, expressed | - |
| 15 | Sobic.002G366600 | expressed protein | - |
| 16 | Sobic.009G183400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed | - |
| 17 | Sobic.004G107700 | expressed protein | - |
| 18 | Sobic.006G039100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed | - |
| 19 | Sobic.003G062600 | limonoid UDP-glucosyltransferase, putative, expressed | - |
| 20 | Sobic.005G091500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed | K06901: putative MFS transporter, AGZA family, xanthine/uracil permease |
Gene co-expression network
Octagon: transcription factors
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