Gene annotation
Transcriptome id Sobic.003G357100.1
Synonym Sb03g039930, AtIPCS1
Functional annotation phosphatidic acid phosphatase-related, putative, expressed
UniProt C5XPT9
Pfam PF14360
Panther DB PTHR21290 PTHR21290:SF29
NCBI CDD KOG3058; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54020 : Arabidopsis Inositol phosphorylceramide synthase 1
RAP-DB (Rice) LOC_Os01g63060.1 : phosphatidic acid phosphatase-related, putative, expressed
MaizeGDB (Corn) Zm00025a026844 , Zm00025a043875 , Zm00025a039644
Brachypodium PNT73200 , KQK10585 , KQK10584 , KQK05959 , KQK10583 , KQK10582
Barley HORVU3Hr1G085630.9 , HORVU3Hr1G085630.8 , HORVU1Hr1G073060.1 , HORVU3Hr1G085630.5 , HORVU3Hr1G085630.4 , HORVU3Hr1G085630.7 , HORVU3Hr1G085630.6 , HORVU3Hr1G085630.1 , HORVU3Hr1G085630.3 , HORVU3Hr1G085630.2 , HORVU1Hr1G073040.5 , HORVU1Hr1G073040.4 , HORVU1Hr1G073040.1 , HORVU1Hr1G073040.3 , HORVU1Hr1G073040.2 , HORVU3Hr1G085630.11 , HORVU3Hr1G085630.10 , HORVU3Hr1G085630.12
Wheat TraesCS3A02G365000 , TraesCS3A02G365000 , TraesCS3B02G396900 , TraesCS1B02G289300 , TraesCS1A02G280400 , TraesCS3D02G358200 , TraesCS3D02G358200 , TraesCS1D02G279500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
2 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
3 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
4 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
5 Sobic.001G115300 RNA recognition motif containing protein, putative, expressed -
6 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
7 Sobic.002G104900 B12D protein, putative, expressed -
8 Sobic.009G179900 OsCML9 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
9 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
11 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
12 Sobic.005G093000 - -
13 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
14 Sobic.003G387000 expressed protein -
15 Sobic.004G269700 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K04708: 3-dehydrosphinganine reductase
16 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
17 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
18 Sobic.003G037800 transferase family protein, putative, expressed -
19 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
20 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic003G357100 Sobic003G357100 Sobic001G389000 Sobic001G389000 Sobic003G357100--Sobic001G389000 Sobic005G103300 Sobic005G103300 Sobic003G357100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic003G357100--Sobic001G516600 Sobic009G159400 Sobic009G159400 Sobic003G357100--Sobic009G159400 Sobic001G115300 Sobic001G115300 Sobic003G357100--Sobic001G115300 Sobic002G082600 Sobic002G082600 Sobic003G357100--Sobic002G082600 Sobic002G104900 Sobic002G104900 Sobic003G357100--Sobic002G104900 Sobic009G179900 Sobic009G179900 Sobic003G357100--Sobic009G179900 Sobic001G119000 Sobic001G119000 Sobic003G357100--Sobic001G119000 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic004G340900 Sobic004G340900 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic003G429000 Sobic003G429000 Sobic001G389000--Sobic003G429000 Sobic002G414600 Sobic002G414600 Sobic005G103300--Sobic002G414600 Sobic005G103500 Sobic005G103500 Sobic005G103300--Sobic005G103500 Sobic003G334600 Sobic003G334600 Sobic005G103300--Sobic003G334600 Sobic003G387000 Sobic003G387000 Sobic005G103300--Sobic003G387000 Sobic001G252300 Sobic001G252300 Sobic005G103300--Sobic001G252300 Sobic001G097600 Sobic001G097600 Sobic005G103300--Sobic001G097600 Sobic005G103300--Sobic001G119000 Sobic005G103300--Sobic002G082600 Sobic002G359300 Sobic002G359300 Sobic005G103300--Sobic002G359300 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G516600--Sobic007G151100 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic003G345100 Sobic003G345100 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic001G140900 Sobic001G140900 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic002G323300 Sobic002G323300 Sobic001G115300--Sobic002G323300 Sobic006G137800 Sobic006G137800 Sobic001G115300--Sobic006G137800 Sobic009G231000 Sobic009G231000 Sobic001G115300--Sobic009G231000 Sobic007G195800 Sobic007G195800 Sobic001G115300--Sobic007G195800 Sobic002G366600 Sobic002G366600 Sobic001G115300--Sobic002G366600 Sobic002G389400 Sobic002G389400 Sobic001G115300--Sobic002G389400 Sobic001G115300--Sobic003G357100 Sobic002G329800 Sobic002G329800 Sobic001G115300--Sobic002G329800 Sobic003G367200 Sobic003G367200 Sobic001G115300--Sobic003G367200 Sobic009G036000 Sobic009G036000 Sobic002G082600--Sobic009G036000 Sobic009G036100 Sobic009G036100 Sobic002G082600--Sobic009G036100 Sobic002G082600--Sobic009G159400 Sobic001G320900 Sobic001G320900 Sobic002G082600--Sobic001G320900 Sobic004G065500 Sobic004G065500 Sobic002G082600--Sobic004G065500 Sobic002G082600--Sobic003G387000 Sobic001G407800 Sobic001G407800 Sobic002G082600--Sobic001G407800 Sobic002G082600--Sobic003G334600 Sobic010G086200 Sobic010G086200 Sobic002G082600--Sobic010G086200 Sobic001G317000 Sobic001G317000 Sobic002G104900--Sobic001G317000 Sobic007G145600 Sobic007G145600 Sobic002G104900--Sobic007G145600 Sobic010G178500 Sobic010G178500 Sobic002G104900--Sobic010G178500 Sobic001G015100 Sobic001G015100 Sobic002G104900--Sobic001G015100 Sobic009G141800 Sobic009G141800 Sobic002G104900--Sobic009G141800 Sobic002G140400 Sobic002G140400 Sobic002G104900--Sobic002G140400 Sobic004G088551 Sobic004G088551 Sobic002G104900--Sobic004G088551 Sobic003G094200 Sobic003G094200 Sobic002G104900--Sobic003G094200 Sobic002G263400 Sobic002G263400 Sobic002G104900--Sobic002G263400 Sobic008G106700 Sobic008G106700 Sobic009G179900--Sobic008G106700 Sobic003G062600 Sobic003G062600 Sobic009G179900--Sobic003G062600 Sobic003G255200 Sobic003G255200 Sobic009G179900--Sobic003G255200 Sobic006G044100 Sobic006G044100 Sobic009G179900--Sobic006G044100 Sobic004G176600 Sobic004G176600 Sobic009G179900--Sobic004G176600 Sobic001G082600 Sobic001G082600 Sobic009G179900--Sobic001G082600 Sobic004G046200 Sobic004G046200 Sobic009G179900--Sobic004G046200 Sobic002G034800 Sobic002G034800 Sobic009G179900--Sobic002G034800 Sobic003G417800 Sobic003G417800 Sobic009G179900--Sobic003G417800 Sobic001G119100 Sobic001G119100 Sobic001G119000--Sobic001G119100 Sobic005G091500 Sobic005G091500 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic001G119000--Sobic002G245100 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G119000--Sobic001G389000
Octagon: transcription factors


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