Gene annotation
Transcriptome id Sobic.004G269700.1
Synonym Sb04g030750
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
UniProt C5Y0D5
Pfam PF13561
Panther DB PTHR24320 PTHR24320:SF1
NCBI CDD KOG1210; Predicted 3-ketosphinganine reductase
KEGG Orthology K04708; 3-dehydrosphinganine reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19200 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os02g47350.1 : oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
MaizeGDB (Corn) Zm00025a032450
Brachypodium KQK00903
Barley HORVU0Hr1G016720.1 , HORVU0Hr1G016720.2
Wheat TraesCS6D02G245000 , TraesCS6B02G297300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
2 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
3 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G195500 reductase, putative, expressed -
5 Sobic.003G357100 phosphatidic acid phosphatase-related, putative, expressed -
6 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
7 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
8 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
9 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
10 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
11 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
12 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
13 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
14 Sobic.008G112600 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
15 Sobic.003G368500 Yip1 domain containing protein, expressed -
16 Sobic.004G284500 ORM1, putative, expressed -
17 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
18 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
19 Sobic.004G101300 expressed protein -
20 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase


Gene co-expression network
sample Sobic004G269700 Sobic004G269700 Sobic007G115100 Sobic007G115100 Sobic004G269700--Sobic007G115100 Sobic010G023800 Sobic010G023800 Sobic004G269700--Sobic010G023800 Sobic001G418900 Sobic001G418900 Sobic004G269700--Sobic001G418900 Sobic010G195500 Sobic010G195500 Sobic004G269700--Sobic010G195500 Sobic003G357100 Sobic003G357100 Sobic004G269700--Sobic003G357100 Sobic001G224400 Sobic001G224400 Sobic004G269700--Sobic001G224400 Sobic008G129400 Sobic008G129400 Sobic004G269700--Sobic008G129400 Sobic001G505500 Sobic001G505500 Sobic004G269700--Sobic001G505500 Sobic010G153100 Sobic010G153100 Sobic004G269700--Sobic010G153100 Sobic007G115100--Sobic001G418900 Sobic007G115100--Sobic004G269700 Sobic003G155400 Sobic003G155400 Sobic007G115100--Sobic003G155400 Sobic007G115100--Sobic001G505500 Sobic007G115100--Sobic010G153100 Sobic001G342200 Sobic001G342200 Sobic007G115100--Sobic001G342200 Sobic007G115100--Sobic010G023800 Sobic010G154700 Sobic010G154700 Sobic007G115100--Sobic010G154700 Sobic004G138800 Sobic004G138800 Sobic007G115100--Sobic004G138800 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic010G023800--Sobic001G505500 Sobic001G418900--Sobic007G115100 Sobic003G443300 Sobic003G443300 Sobic001G418900--Sobic003G443300 Sobic001G418900--Sobic004G138800 Sobic004G310300 Sobic004G310300 Sobic001G418900--Sobic004G310300 Sobic002G257300 Sobic002G257300 Sobic001G418900--Sobic002G257300 Sobic009G119900 Sobic009G119900 Sobic001G418900--Sobic009G119900 Sobic001G418900--Sobic003G155400 Sobic005G188100 Sobic005G188100 Sobic001G418900--Sobic005G188100 Sobic005G110800 Sobic005G110800 Sobic001G418900--Sobic005G110800 Sobic005G093000 Sobic005G093000 Sobic010G195500--Sobic005G093000 Sobic002G312900 Sobic002G312900 Sobic010G195500--Sobic002G312900 Sobic002G329000 Sobic002G329000 Sobic010G195500--Sobic002G329000 Sobic010G268400 Sobic010G268400 Sobic010G195500--Sobic010G268400 Sobic010G008400 Sobic010G008400 Sobic010G195500--Sobic010G008400 Sobic001G147900 Sobic001G147900 Sobic010G195500--Sobic001G147900 Sobic004G062500 Sobic004G062500 Sobic010G195500--Sobic004G062500 Sobic010G239500 Sobic010G239500 Sobic010G195500--Sobic010G239500 Sobic004G101300 Sobic004G101300 Sobic010G195500--Sobic004G101300 Sobic001G389000 Sobic001G389000 Sobic003G357100--Sobic001G389000 Sobic005G103300 Sobic005G103300 Sobic003G357100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic003G357100--Sobic001G516600 Sobic009G159400 Sobic009G159400 Sobic003G357100--Sobic009G159400 Sobic001G115300 Sobic001G115300 Sobic003G357100--Sobic001G115300 Sobic002G082600 Sobic002G082600 Sobic003G357100--Sobic002G082600 Sobic002G104900 Sobic002G104900 Sobic003G357100--Sobic002G104900 Sobic009G179900 Sobic009G179900 Sobic003G357100--Sobic009G179900 Sobic001G119000 Sobic001G119000 Sobic003G357100--Sobic001G119000 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic010G018400 Sobic010G018400 Sobic008G129400--Sobic010G018400 Sobic009G176000 Sobic009G176000 Sobic008G129400--Sobic009G176000 Sobic002G190900 Sobic002G190900 Sobic008G129400--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic008G129400--Sobic002G398901 Sobic007G051000 Sobic007G051000 Sobic008G129400--Sobic007G051000 Sobic006G083500 Sobic006G083500 Sobic008G129400--Sobic006G083500 Sobic010G012500 Sobic010G012500 Sobic008G129400--Sobic010G012500 Sobic001G445800 Sobic001G445800 Sobic008G129400--Sobic001G445800 Sobic008G129400--Sobic003G209000 Sobic001G505500--Sobic004G138800 Sobic001G505500--Sobic001G418900 Sobic001G505500--Sobic007G115100 Sobic007G076300 Sobic007G076300 Sobic001G505500--Sobic007G076300 Sobic007G092100 Sobic007G092100 Sobic001G505500--Sobic007G092100 Sobic001G334300 Sobic001G334300 Sobic001G505500--Sobic001G334300 Sobic001G018800 Sobic001G018800 Sobic001G505500--Sobic001G018800 Sobic009G227400 Sobic009G227400 Sobic001G505500--Sobic009G227400 Sobic001G513500 Sobic001G513500 Sobic001G505500--Sobic001G513500 Sobic001G084900 Sobic001G084900 Sobic010G153100--Sobic001G084900 Sobic010G153100--Sobic001G224400 Sobic010G153100--Sobic003G155400 Sobic010G153100--Sobic001G445800 Sobic010G153100--Sobic010G154700 Sobic010G153100--Sobic010G213400 Sobic010G153100--Sobic007G115100 Sobic001G067601 Sobic001G067601 Sobic010G153100--Sobic001G067601 Sobic006G141500 Sobic006G141500 Sobic010G153100--Sobic006G141500
Octagon: transcription factors


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