Gene annotation
Transcriptome id Sobic.010G023800.1
Synonym Sb10g002230
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
UniProt C5Z3D1
Pfam PF00275
Panther DB PTHR21090 PTHR21090:SF21
NCBI CDD -
KEGG Orthology K00800; 3-phosphoshikimate 1-carboxyvinyltransferase
Gene Ontology GO:0016765; transferase activity, transferring alkyl or aryl (other than methyl) groups


Orthologs (automatic annotation)
TAIR AT2G45300 : RNA 3\'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
RAP-DB (Rice) LOC_Os06g04280.1 : 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050135
Brachypodium KQK19983 , KQK19984
Barley HORVU7Hr1G013710.1 , HORVU7Hr1G013710.2
Wheat TraesCS7A02G071200 , TraesCSU02G063500 , TraesCS7D02G066600
Populus -


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cDNA sequences
Sobic.010G023800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
2 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
3 Sobic.004G269700 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K04708: 3-dehydrosphinganine reductase
4 Sobic.001G459900 leucine-rich repeat resistance protein, putative, expressed -
5 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
6 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
7 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
8 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
9 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
10 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
12 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
13 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
14 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
15 Sobic.001G084900 expressed protein -
16 Sobic.003G357100 phosphatidic acid phosphatase-related, putative, expressed -
17 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
18 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
19 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
20 Sobic.002G190900 expressed protein -


Gene co-expression network
sample Sobic010G023800 Sobic010G023800 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic001G418900 Sobic001G418900 Sobic007G115100--Sobic001G418900 Sobic007G115100--Sobic004G269700 Sobic003G155400 Sobic003G155400 Sobic007G115100--Sobic003G155400 Sobic007G115100--Sobic001G505500 Sobic010G153100 Sobic010G153100 Sobic007G115100--Sobic010G153100 Sobic001G342200 Sobic001G342200 Sobic007G115100--Sobic001G342200 Sobic007G115100--Sobic010G023800 Sobic010G154700 Sobic010G154700 Sobic007G115100--Sobic010G154700 Sobic004G138800 Sobic004G138800 Sobic007G115100--Sobic004G138800 Sobic003G346600 Sobic003G346600 Sobic010G060500--Sobic003G346600 Sobic006G137100 Sobic006G137100 Sobic010G060500--Sobic006G137100 Sobic004G008400 Sobic004G008400 Sobic010G060500--Sobic004G008400 Sobic009G166500 Sobic009G166500 Sobic010G060500--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic010G060500--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic010G060500--Sobic007G178600 Sobic002G255300 Sobic002G255300 Sobic010G060500--Sobic002G255300 Sobic006G213000 Sobic006G213000 Sobic010G060500--Sobic006G213000 Sobic009G163800 Sobic009G163800 Sobic010G060500--Sobic009G163800 Sobic004G269700--Sobic007G115100 Sobic004G269700--Sobic010G023800 Sobic004G269700--Sobic001G418900 Sobic010G195500 Sobic010G195500 Sobic004G269700--Sobic010G195500 Sobic003G357100 Sobic003G357100 Sobic004G269700--Sobic003G357100 Sobic001G224400 Sobic001G224400 Sobic004G269700--Sobic001G224400 Sobic004G269700--Sobic008G129400 Sobic004G269700--Sobic001G505500 Sobic004G269700--Sobic010G153100 Sobic001G459900--Sobic010G023800 Sobic009G212200 Sobic009G212200 Sobic001G459900--Sobic009G212200 Sobic001G281300 Sobic001G281300 Sobic001G459900--Sobic001G281300 Sobic003G379600 Sobic003G379600 Sobic001G459900--Sobic003G379600 Sobic001G334300 Sobic001G334300 Sobic001G459900--Sobic001G334300 Sobic001G459900--Sobic010G060500 Sobic004G231300 Sobic004G231300 Sobic001G459900--Sobic004G231300 Sobic001G014000 Sobic001G014000 Sobic001G459900--Sobic001G014000 Sobic009G144300 Sobic009G144300 Sobic001G459900--Sobic009G144300 Sobic004G259200 Sobic004G259200 Sobic003G209000--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic003G209000--Sobic001G404800 Sobic002G418400 Sobic002G418400 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic003G209000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic003G209000--Sobic003G215700 Sobic007G051000 Sobic007G051000 Sobic003G209000--Sobic007G051000 Sobic009G119900 Sobic009G119900 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic009G149400--Sobic002G187500 Sobic001G281400 Sobic001G281400 Sobic009G149400--Sobic001G281400 Sobic003G285800 Sobic003G285800 Sobic009G149400--Sobic003G285800 Sobic002G267500 Sobic002G267500 Sobic009G149400--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic009G149400--Sobic004G272800 Sobic009G149400--Sobic010G023800 Sobic001G433700 Sobic001G433700 Sobic009G149400--Sobic001G433700 Sobic004G284500 Sobic004G284500 Sobic009G149400--Sobic004G284500 Sobic007G171000 Sobic007G171000 Sobic009G149400--Sobic007G171000 Sobic010G018400 Sobic010G018400 Sobic008G129400--Sobic010G018400 Sobic009G176000 Sobic009G176000 Sobic008G129400--Sobic009G176000 Sobic002G190900 Sobic002G190900 Sobic008G129400--Sobic002G190900 Sobic008G129400--Sobic002G398901 Sobic008G129400--Sobic007G051000 Sobic008G129400--Sobic006G083500 Sobic010G012500 Sobic010G012500 Sobic008G129400--Sobic010G012500 Sobic001G445800 Sobic001G445800 Sobic008G129400--Sobic001G445800 Sobic008G129400--Sobic003G209000 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic001G505500--Sobic004G138800 Sobic001G505500--Sobic001G418900 Sobic001G505500--Sobic007G115100 Sobic007G076300 Sobic007G076300 Sobic001G505500--Sobic007G076300 Sobic007G092100 Sobic007G092100 Sobic001G505500--Sobic007G092100 Sobic001G505500--Sobic001G334300 Sobic001G018800 Sobic001G018800 Sobic001G505500--Sobic001G018800 Sobic009G227400 Sobic009G227400 Sobic001G505500--Sobic009G227400 Sobic001G513500 Sobic001G513500 Sobic001G505500--Sobic001G513500
Octagon: transcription factors


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