Gene annotation
Transcriptome id Sobic.001G459900.1
Synonym Sb01g043160
Functional annotation leucine-rich repeat resistance protein, putative, expressed
UniProt C5WTN0
Pfam PF08263 PF00560 PF13855
Panther DB PTHR27000 PTHR27000:SF120
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G61240 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os03g11340.1 : leucine-rich repeat resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a001268
Brachypodium KQK22949
Barley HORVU4Hr1G068770.10 , HORVU4Hr1G068770.11 , HORVU4Hr1G068770.2 , HORVU4Hr1G068770.3 , HORVU4Hr1G068770.1 , HORVU4Hr1G068770.6 , HORVU4Hr1G068770.7 , HORVU4Hr1G068770.4 , HORVU4Hr1G068770.5 , HORVU4Hr1G068770.8 , HORVU4Hr1G068770.9
Wheat TraesCS4D02G249800 , TraesCS4B02G249600 , TraesCS4A02G055000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
2 Sobic.009G212200 expressed protein -
3 Sobic.001G281300 dehydration response related protein, putative, expressed -
4 Sobic.003G379600 methyltransferase, putative, expressed -
5 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
6 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
7 Sobic.004G231300 dehydration response related protein, putative, expressed -
8 Sobic.001G014000 P21-Rho-binding domain containing protein, putative, expressed -
9 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
10 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
11 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
12 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
13 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
14 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
15 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
16 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
17 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
18 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
19 Sobic.003G333800 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
20 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic001G459900 Sobic001G459900 Sobic010G023800 Sobic010G023800 Sobic001G459900--Sobic010G023800 Sobic009G212200 Sobic009G212200 Sobic001G459900--Sobic009G212200 Sobic001G281300 Sobic001G281300 Sobic001G459900--Sobic001G281300 Sobic003G379600 Sobic003G379600 Sobic001G459900--Sobic003G379600 Sobic001G334300 Sobic001G334300 Sobic001G459900--Sobic001G334300 Sobic010G060500 Sobic010G060500 Sobic001G459900--Sobic010G060500 Sobic004G231300 Sobic004G231300 Sobic001G459900--Sobic004G231300 Sobic001G014000 Sobic001G014000 Sobic001G459900--Sobic001G014000 Sobic009G144300 Sobic009G144300 Sobic001G459900--Sobic009G144300 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic001G286200 Sobic001G286200 Sobic009G212200--Sobic001G286200 Sobic003G215700 Sobic003G215700 Sobic009G212200--Sobic003G215700 Sobic001G304400 Sobic001G304400 Sobic009G212200--Sobic001G304400 Sobic003G443300 Sobic003G443300 Sobic009G212200--Sobic003G443300 Sobic002G356400 Sobic002G356400 Sobic009G212200--Sobic002G356400 Sobic010G264300 Sobic010G264300 Sobic009G212200--Sobic010G264300 Sobic001G134400 Sobic001G134400 Sobic009G212200--Sobic001G134400 Sobic003G249700 Sobic003G249700 Sobic009G212200--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic009G212200--Sobic009G076400 Sobic001G281300--Sobic004G231300 Sobic001G281300--Sobic001G459900 Sobic001G281300--Sobic010G023800 Sobic001G281300--Sobic003G379600 Sobic001G533400 Sobic001G533400 Sobic001G281300--Sobic001G533400 Sobic002G201600 Sobic002G201600 Sobic001G281300--Sobic002G201600 Sobic010G023900 Sobic010G023900 Sobic001G281300--Sobic010G023900 Sobic001G281300--Sobic009G212200 Sobic009G227400 Sobic009G227400 Sobic001G281300--Sobic009G227400 Sobic006G137800 Sobic006G137800 Sobic003G379600--Sobic006G137800 Sobic007G198000 Sobic007G198000 Sobic003G379600--Sobic007G198000 Sobic001G533000 Sobic001G533000 Sobic003G379600--Sobic001G533000 Sobic003G379600--Sobic001G459900 Sobic001G475500 Sobic001G475500 Sobic003G379600--Sobic001G475500 Sobic006G159600 Sobic006G159600 Sobic003G379600--Sobic006G159600 Sobic004G217450 Sobic004G217450 Sobic003G379600--Sobic004G217450 Sobic003G160700 Sobic003G160700 Sobic003G379600--Sobic003G160700 Sobic004G345500 Sobic004G345500 Sobic003G379600--Sobic004G345500 Sobic009G233400 Sobic009G233400 Sobic001G334300--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic001G334300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic001G334300--Sobic003G387900 Sobic001G334300--Sobic009G144300 Sobic001G085400 Sobic001G085400 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic005G050500 Sobic005G050500 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic003G346600 Sobic003G346600 Sobic010G060500--Sobic003G346600 Sobic006G137100 Sobic006G137100 Sobic010G060500--Sobic006G137100 Sobic004G008400 Sobic004G008400 Sobic010G060500--Sobic004G008400 Sobic009G166500 Sobic009G166500 Sobic010G060500--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic010G060500--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic010G060500--Sobic007G178600 Sobic002G255300 Sobic002G255300 Sobic010G060500--Sobic002G255300 Sobic006G213000 Sobic006G213000 Sobic010G060500--Sobic006G213000 Sobic009G163800 Sobic009G163800 Sobic010G060500--Sobic009G163800 Sobic004G231300--Sobic001G281300 Sobic004G231300--Sobic001G459900 Sobic004G231300--Sobic010G023800 Sobic004G231300--Sobic001G533400 Sobic004G231300--Sobic003G379600 Sobic004G274900 Sobic004G274900 Sobic004G231300--Sobic004G274900 Sobic004G231300--Sobic001G505500 Sobic004G123000 Sobic004G123000 Sobic004G231300--Sobic004G123000 Sobic004G231300--Sobic002G201600 Sobic003G436700 Sobic003G436700 Sobic001G014000--Sobic003G436700 Sobic003G062600 Sobic003G062600 Sobic001G014000--Sobic003G062600 Sobic004G046200 Sobic004G046200 Sobic001G014000--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic001G014000--Sobic006G044100 Sobic003G418766 Sobic003G418766 Sobic001G014000--Sobic003G418766 Sobic008G106700 Sobic008G106700 Sobic001G014000--Sobic008G106700 Sobic006G136800 Sobic006G136800 Sobic001G014000--Sobic006G136800 Sobic010G063801 Sobic010G063801 Sobic001G014000--Sobic010G063801 Sobic009G105700 Sobic009G105700 Sobic001G014000--Sobic009G105700 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G144300--Sobic009G227400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G144300--Sobic002G255100
Octagon: transcription factors


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