Gene annotation
Transcriptome id Sobic.001G281300.5,Sobic.001G281300.4
Synonym Sb01g027660, ERD3
Functional annotation dehydration response related protein, putative, expressed
UniProt C5WQL4
Pfam PF03141
Panther DB PTHR10108 PTHR10108:SF844
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G19120 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os10g36690.2 : dehydration response related protein, putative, expressed
MaizeGDB (Corn) Zm00025a021496 , Zm00025a025710 , Zm00025a003591 , Zm00025a012764 , Zm00025a032303
Brachypodium KQJ96217 , KQJ89118 , KQK00747 , PNT67156 , PNT67155
Barley HORVU1Hr1G051470.6 , HORVU1Hr1G051470.7 , HORVU6Hr1G065360.12 , HORVU6Hr1G065360.10 , HORVU6Hr1G065360.11 , HORVU6Hr1G065360.14 , HORVU4Hr1G017470.3 , HORVU4Hr1G017470.2 , HORVU4Hr1G017470.1 , HORVU4Hr1G017470.6 , HORVU4Hr1G017470.5 , HORVU4Hr1G017470.4 , HORVU2Hr1G095070.2 , HORVU2Hr1G095070.1 , HORVU6Hr1G065360.9 , HORVU6Hr1G065360.1 , HORVU6Hr1G065360.2 , HORVU6Hr1G065360.3 , HORVU6Hr1G065360.4 , HORVU6Hr1G065360.5 , HORVU6Hr1G065360.6 , HORVU6Hr1G065360.7 , HORVU1Hr1G051470.8 , HORVU1Hr1G051470.9 , HORVU1Hr1G051470.1 , HORVU1Hr1G051470.2 , HORVU1Hr1G051470.5 , HORVU6Hr1G065360.15 , HORVU1Hr1G051470.3 , HORVU1Hr1G051470.4
Wheat TraesCS6B02G269400 , TraesCS1D02G202300 , TraesCS1D02G202300 , TraesCS6A02G256000 , TraesCS1B02G213600 , TraesCS1B02G213600 , TraesCS4D02G094600 , TraesCS4B02G098500 , TraesCS4A02G220000 , TraesCS6D02G237200 , TraesCS2D02G397900 , TraesCS2B02G418400 , TraesCS1A02G198600 , TraesCS2A02G400300 , TraesCS2A02G400300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G281300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G231300 dehydration response related protein, putative, expressed -
2 Sobic.001G459900 leucine-rich repeat resistance protein, putative, expressed -
3 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
4 Sobic.003G379600 methyltransferase, putative, expressed -
5 Sobic.001G533400 major facilitator superfamily domain-containing protein 5, putative, expressed -
6 Sobic.002G201600 methyltransferase, putative, expressed -
7 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
8 Sobic.009G212200 expressed protein -
9 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
10 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
11 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
12 Sobic.010G001900 Long chain acyl-CoA oxidase(PubMedID : 18985313)@acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
13 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
14 Sobic.004G123000 expressed protein -
15 Sobic.009G054000 expressed protein -
16 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
17 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
18 Sobic.008G127500 expressed protein -
19 Sobic.003G074900 expressed protein -
20 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e


Gene co-expression network
sample Sobic001G281300 Sobic001G281300 Sobic004G231300 Sobic004G231300 Sobic001G281300--Sobic004G231300 Sobic001G459900 Sobic001G459900 Sobic001G281300--Sobic001G459900 Sobic010G023800 Sobic010G023800 Sobic001G281300--Sobic010G023800 Sobic003G379600 Sobic003G379600 Sobic001G281300--Sobic003G379600 Sobic001G533400 Sobic001G533400 Sobic001G281300--Sobic001G533400 Sobic002G201600 Sobic002G201600 Sobic001G281300--Sobic002G201600 Sobic010G023900 Sobic010G023900 Sobic001G281300--Sobic010G023900 Sobic009G212200 Sobic009G212200 Sobic001G281300--Sobic009G212200 Sobic009G227400 Sobic009G227400 Sobic001G281300--Sobic009G227400 Sobic004G231300--Sobic001G281300 Sobic004G231300--Sobic001G459900 Sobic004G231300--Sobic010G023800 Sobic004G231300--Sobic001G533400 Sobic004G231300--Sobic003G379600 Sobic004G274900 Sobic004G274900 Sobic004G231300--Sobic004G274900 Sobic001G505500 Sobic001G505500 Sobic004G231300--Sobic001G505500 Sobic004G123000 Sobic004G123000 Sobic004G231300--Sobic004G123000 Sobic004G231300--Sobic002G201600 Sobic001G459900--Sobic010G023800 Sobic001G459900--Sobic009G212200 Sobic001G459900--Sobic001G281300 Sobic001G459900--Sobic003G379600 Sobic001G334300 Sobic001G334300 Sobic001G459900--Sobic001G334300 Sobic010G060500 Sobic010G060500 Sobic001G459900--Sobic010G060500 Sobic001G459900--Sobic004G231300 Sobic001G014000 Sobic001G014000 Sobic001G459900--Sobic001G014000 Sobic009G144300 Sobic009G144300 Sobic001G459900--Sobic009G144300 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic010G023800--Sobic001G505500 Sobic006G137800 Sobic006G137800 Sobic003G379600--Sobic006G137800 Sobic007G198000 Sobic007G198000 Sobic003G379600--Sobic007G198000 Sobic001G533000 Sobic001G533000 Sobic003G379600--Sobic001G533000 Sobic003G379600--Sobic001G459900 Sobic001G475500 Sobic001G475500 Sobic003G379600--Sobic001G475500 Sobic006G159600 Sobic006G159600 Sobic003G379600--Sobic006G159600 Sobic004G217450 Sobic004G217450 Sobic003G379600--Sobic004G217450 Sobic003G160700 Sobic003G160700 Sobic003G379600--Sobic003G160700 Sobic004G345500 Sobic004G345500 Sobic003G379600--Sobic004G345500 Sobic001G339700 Sobic001G339700 Sobic001G533400--Sobic001G339700 Sobic010G001900 Sobic010G001900 Sobic001G533400--Sobic010G001900 Sobic001G119100 Sobic001G119100 Sobic001G533400--Sobic001G119100 Sobic001G533400--Sobic002G201600 Sobic008G025600 Sobic008G025600 Sobic001G533400--Sobic008G025600 Sobic004G205100 Sobic004G205100 Sobic001G533400--Sobic004G205100 Sobic005G091500 Sobic005G091500 Sobic001G533400--Sobic005G091500 Sobic001G119000 Sobic001G119000 Sobic001G533400--Sobic001G119000 Sobic001G252300 Sobic001G252300 Sobic001G533400--Sobic001G252300 Sobic002G201600--Sobic001G533400 Sobic002G201600--Sobic010G001900 Sobic002G201600--Sobic001G339700 Sobic002G201600--Sobic008G025600 Sobic009G120000 Sobic009G120000 Sobic002G201600--Sobic009G120000 Sobic002G201600--Sobic006G137800 Sobic010G209900 Sobic010G209900 Sobic002G201600--Sobic010G209900 Sobic004G273400 Sobic004G273400 Sobic002G201600--Sobic004G273400 Sobic002G416600 Sobic002G416600 Sobic002G201600--Sobic002G416600 Sobic004G342400 Sobic004G342400 Sobic010G023900--Sobic004G342400 Sobic010G023900--Sobic001G334300 Sobic010G023900--Sobic009G227400 Sobic002G286900 Sobic002G286900 Sobic010G023900--Sobic002G286900 Sobic003G387900 Sobic003G387900 Sobic010G023900--Sobic003G387900 Sobic009G179100 Sobic009G179100 Sobic010G023900--Sobic009G179100 Sobic009G233400 Sobic009G233400 Sobic010G023900--Sobic009G233400 Sobic006G213000 Sobic006G213000 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500 Sobic001G286200 Sobic001G286200 Sobic009G212200--Sobic001G286200 Sobic003G215700 Sobic003G215700 Sobic009G212200--Sobic003G215700 Sobic001G304400 Sobic001G304400 Sobic009G212200--Sobic001G304400 Sobic003G443300 Sobic003G443300 Sobic009G212200--Sobic003G443300 Sobic002G356400 Sobic002G356400 Sobic009G212200--Sobic002G356400 Sobic010G264300 Sobic010G264300 Sobic009G212200--Sobic010G264300 Sobic001G134400 Sobic001G134400 Sobic009G212200--Sobic001G134400 Sobic003G249700 Sobic003G249700 Sobic009G212200--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic009G212200--Sobic009G076400 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic006G137100 Sobic006G137100 Sobic009G227400--Sobic006G137100 Sobic009G227400--Sobic002G286900 Sobic009G227400--Sobic009G076400 Sobic002G049300 Sobic002G049300 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.