Gene annotation
Transcriptome id Sobic.009G054000.1
Synonym Sb09g004540
Functional annotation expressed protein
UniProt C5Z0M6
Pfam PF05832
Panther DB PTHR13019 PTHR13019:SF14
NCBI CDD KOG3195; Uncharacterized membrane protein NPD008/CGI-148
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G09330 : -
RAP-DB (Rice) LOC_Os05g06700.2 : expressed protein
MaizeGDB (Corn) Zm00025a024425 , Zm00025a038022
Brachypodium KQK07361 , KQK07362
Barley HORVU1Hr1G023500.9 , HORVU1Hr1G023500.8 , HORVU1Hr1G023500.1 , HORVU1Hr1G023500.11 , HORVU1Hr1G023500.3 , HORVU1Hr1G023500.2 , HORVU1Hr1G023500.5 , HORVU1Hr1G023500.10 , HORVU1Hr1G023500.7 , HORVU1Hr1G023500.6 , HORVU1Hr1G023500.4
Wheat TraesCS1D02G109000 , TraesCS1B02G128400 , TraesCS1A02G106000
Populus -


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cDNA sequences
Sobic.009G054000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G123000 expressed protein -
2 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
3 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
4 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
5 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
6 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
7 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
8 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
9 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
10 Sobic.001G018500 expressed protein K17784: MINOS1, mitochondrial inner membrane organizing system protein 1
11 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
12 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
13 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
14 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
15 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
16 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
17 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
18 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
19 Sobic.002G296200 expressed protein -
20 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae


Gene co-expression network
sample Sobic009G054000 Sobic009G054000 Sobic004G123000 Sobic004G123000 Sobic009G054000--Sobic004G123000 Sobic001G404800 Sobic001G404800 Sobic009G054000--Sobic001G404800 Sobic003G209000 Sobic003G209000 Sobic009G054000--Sobic003G209000 Sobic003G129800 Sobic003G129800 Sobic009G054000--Sobic003G129800 Sobic010G028200 Sobic010G028200 Sobic009G054000--Sobic010G028200 Sobic009G179100 Sobic009G179100 Sobic009G054000--Sobic009G179100 Sobic001G334300 Sobic001G334300 Sobic009G054000--Sobic001G334300 Sobic009G101700 Sobic009G101700 Sobic009G054000--Sobic009G101700 Sobic003G155400 Sobic003G155400 Sobic009G054000--Sobic003G155400 Sobic004G123000--Sobic009G054000 Sobic006G239300 Sobic006G239300 Sobic004G123000--Sobic006G239300 Sobic001G350600 Sobic001G350600 Sobic004G123000--Sobic001G350600 Sobic004G123000--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic004G123000--Sobic002G296200 Sobic006G013000 Sobic006G013000 Sobic004G123000--Sobic006G013000 Sobic004G123000--Sobic003G155400 Sobic004G159000 Sobic004G159000 Sobic004G123000--Sobic004G159000 Sobic004G123000--Sobic001G404800 Sobic001G404800--Sobic003G209000 Sobic004G259200 Sobic004G259200 Sobic001G404800--Sobic004G259200 Sobic001G047800 Sobic001G047800 Sobic001G404800--Sobic001G047800 Sobic003G215700 Sobic003G215700 Sobic001G404800--Sobic003G215700 Sobic002G418400 Sobic002G418400 Sobic001G404800--Sobic002G418400 Sobic002G356400 Sobic002G356400 Sobic001G404800--Sobic002G356400 Sobic002G309700 Sobic002G309700 Sobic001G404800--Sobic002G309700 Sobic006G083500 Sobic006G083500 Sobic001G404800--Sobic006G083500 Sobic004G260200 Sobic004G260200 Sobic001G404800--Sobic004G260200 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic003G209000--Sobic006G083500 Sobic003G209000--Sobic003G215700 Sobic007G051000 Sobic007G051000 Sobic003G209000--Sobic007G051000 Sobic009G119900 Sobic009G119900 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G249700 Sobic003G249700 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic004G066800 Sobic004G066800 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic010G028200--Sobic003G209000 Sobic010G065900 Sobic010G065900 Sobic010G028200--Sobic010G065900 Sobic010G028200--Sobic002G418400 Sobic010G028200--Sobic001G404800 Sobic003G436700 Sobic003G436700 Sobic010G028200--Sobic003G436700 Sobic004G055700 Sobic004G055700 Sobic010G028200--Sobic004G055700 Sobic003G160700 Sobic003G160700 Sobic010G028200--Sobic003G160700 Sobic004G008400 Sobic004G008400 Sobic010G028200--Sobic004G008400 Sobic002G136700 Sobic002G136700 Sobic010G028200--Sobic002G136700 Sobic009G179100--Sobic002G304900 Sobic009G179100--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G233400 Sobic009G233400 Sobic009G179100--Sobic009G233400 Sobic003G387900 Sobic003G387900 Sobic009G179100--Sobic003G387900 Sobic001G039400 Sobic001G039400 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic009G144300 Sobic009G144300 Sobic001G334300--Sobic009G144300 Sobic001G085400 Sobic001G085400 Sobic001G334300--Sobic001G085400 Sobic001G334300--Sobic009G179100 Sobic009G227400 Sobic009G227400 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic009G101700--Sobic009G179100 Sobic009G101700--Sobic005G050500 Sobic009G101700--Sobic001G334300 Sobic009G101700--Sobic003G387900 Sobic009G101700--Sobic004G342400 Sobic006G213000 Sobic006G213000 Sobic009G101700--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic009G101700--Sobic001G226500 Sobic009G242400 Sobic009G242400 Sobic009G101700--Sobic009G242400 Sobic002G379500 Sobic002G379500 Sobic009G101700--Sobic002G379500 Sobic010G154700 Sobic010G154700 Sobic003G155400--Sobic010G154700 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G155400--Sobic003G215700
Octagon: transcription factors


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