Gene annotation
Transcriptome id Sobic.005G091700.1
Synonym Sb05g007540
Functional annotation 60S ribosomal protein L18a, putative, expressed
UniProt C5Y895
Pfam PF01775
Panther DB PTHR10052 PTHR10052:SF10
NCBI CDD KOG0829; 60S ribosomal protein L18A
KEGG Orthology K02882; RP-L18Ae, large subunit ribosomal protein L18Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G34480 : Ribosomal protein L18ae/LX family protein
RAP-DB (Rice) LOC_Os05g49030.1 : 60S ribosomal protein L18a, putative, expressed
MaizeGDB (Corn) Zm00025a038757 , Zm00025a030911 , Zm00025a036615 , Zm00025a028127 , Zm00025a044581
Brachypodium KQK09754 , KQK09092 , KQK04859
Barley HORVU1Hr1G088040.3 , HORVU1Hr1G088040.2 , HORVU1Hr1G088040.1 , HORVU1Hr1G088040.4 , HORVU3Hr1G060800.1 , HORVU3Hr1G060800.2
Wheat TraesCS1A02G399800 , TraesCS3A02G247600 , TraesCS3D02G243800 , TraesCS1D02G407500 , TraesCS1B02G427900 , TraesCS3B02G271800
Populus -


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cDNA sequences
Sobic.005G091700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
2 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
3 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
4 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
5 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
6 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
7 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
8 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
9 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
10 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
11 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
12 Sobic.004G103700 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
13 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
14 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
15 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
16 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
17 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
18 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
19 Sobic.003G233500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
20 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1


Gene co-expression network
sample Sobic005G091700 Sobic005G091700 Sobic001G513500 Sobic001G513500 Sobic005G091700--Sobic001G513500 Sobic010G100000 Sobic010G100000 Sobic005G091700--Sobic010G100000 Sobic009G101700 Sobic009G101700 Sobic005G091700--Sobic009G101700 Sobic001G018800 Sobic001G018800 Sobic005G091700--Sobic001G018800 Sobic003G129800 Sobic003G129800 Sobic005G091700--Sobic003G129800 Sobic002G331300 Sobic002G331300 Sobic005G091700--Sobic002G331300 Sobic009G179100 Sobic009G179100 Sobic005G091700--Sobic009G179100 Sobic001G011200 Sobic001G011200 Sobic005G091700--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic005G091700--Sobic005G050500 Sobic001G513500--Sobic001G011200 Sobic002G056200 Sobic002G056200 Sobic001G513500--Sobic002G056200 Sobic001G513500--Sobic003G129800 Sobic001G513500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic001G513500--Sobic001G334300 Sobic001G513500--Sobic009G179100 Sobic004G310300 Sobic004G310300 Sobic001G513500--Sobic004G310300 Sobic001G513500--Sobic005G091700 Sobic001G513500--Sobic010G100000 Sobic010G100000--Sobic001G513500 Sobic010G100000--Sobic001G011200 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic001G481700 Sobic001G481700 Sobic010G100000--Sobic001G481700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic009G101700--Sobic009G179100 Sobic009G101700--Sobic005G050500 Sobic009G101700--Sobic001G334300 Sobic003G387900 Sobic003G387900 Sobic009G101700--Sobic003G387900 Sobic004G342400 Sobic004G342400 Sobic009G101700--Sobic004G342400 Sobic006G213000 Sobic006G213000 Sobic009G101700--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic009G101700--Sobic001G226500 Sobic009G242400 Sobic009G242400 Sobic009G101700--Sobic009G242400 Sobic002G379500 Sobic002G379500 Sobic009G101700--Sobic002G379500 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G018800--Sobic001G011200 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G249700 Sobic003G249700 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic004G066800 Sobic004G066800 Sobic003G129800--Sobic004G066800 Sobic003G129800--Sobic005G050500 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic002G331300--Sobic005G050500 Sobic002G331300--Sobic003G129800 Sobic002G331300--Sobic009G179100 Sobic002G331300--Sobic004G342400 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic002G331300--Sobic009G227400 Sobic002G331300--Sobic010G023900 Sobic009G179100--Sobic002G304900 Sobic009G179100--Sobic009G101700 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G179100--Sobic009G233400 Sobic009G179100--Sobic003G387900 Sobic001G039400 Sobic001G039400 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500 Sobic001G011200--Sobic001G436200 Sobic002G374900 Sobic002G374900 Sobic001G011200--Sobic002G374900 Sobic001G091801 Sobic001G091801 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic004G198400 Sobic004G198400 Sobic001G011200--Sobic004G198400 Sobic001G011200--Sobic003G280700 Sobic001G403500 Sobic001G403500 Sobic001G011200--Sobic001G403500 Sobic001G046300 Sobic001G046300 Sobic001G011200--Sobic001G046300 Sobic001G016400 Sobic001G016400 Sobic001G011200--Sobic001G016400 Sobic005G050500--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400
Octagon: transcription factors


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