Gene annotation
Transcriptome id Sobic.006G124300.2,Sobic.006G124300.1
Synonym Sb06g020460
Functional annotation metalloprotease ATP23, putative, expressed
UniProt A0A1Z5RDH7 , C5YAU8
Pfam PF09768
Panther DB PTHR21711 PTHR21711:SF0
NCBI CDD KOG3314; Ku70-binding protein
KEGG Orthology K18156; ATP23, mitochondrial inner membrane protease ATP23
Gene Ontology GO:0004222; metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G03420 : Ku70-binding family protein
RAP-DB (Rice) LOC_Os12g19090.1 : metalloprotease ATP23, putative, expressed
MaizeGDB (Corn) Zm00025a010969
Brachypodium -
Barley HORVU2Hr1G083530.1 , HORVU2Hr1G083530.3 , HORVU2Hr1G083530.2 , HORVU2Hr1G083530.5 , HORVU2Hr1G083530.4 , HORVU2Hr1G083530.6
Wheat TraesCS2B02G359800 , TraesCS2A02G322800 , TraesCS2D02G340100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G211900 expressed protein -
2 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
3 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
4 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
5 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
6 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
7 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
8 Sobic.003G074900 expressed protein -
9 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
10 Sobic.001G181500 expressed protein -
11 Sobic.009G215300 fiber protein Fb11, putative, expressed -
12 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
13 Sobic.003G016300 SFT2, putative, expressed -
14 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
15 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
16 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
17 Sobic.004G259200 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
18 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
19 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
20 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a


Gene co-expression network
sample Sobic006G124300 Sobic006G124300 Sobic009G211900 Sobic009G211900 Sobic006G124300--Sobic009G211900 Sobic006G203900 Sobic006G203900 Sobic006G124300--Sobic006G203900 Sobic008G136800 Sobic008G136800 Sobic006G124300--Sobic008G136800 Sobic004G260200 Sobic004G260200 Sobic006G124300--Sobic004G260200 Sobic005G091700 Sobic005G091700 Sobic006G124300--Sobic005G091700 Sobic001G030300 Sobic001G030300 Sobic006G124300--Sobic001G030300 Sobic003G135600 Sobic003G135600 Sobic006G124300--Sobic003G135600 Sobic003G074900 Sobic003G074900 Sobic006G124300--Sobic003G074900 Sobic001G350600 Sobic001G350600 Sobic006G124300--Sobic001G350600 Sobic009G215300 Sobic009G215300 Sobic009G211900--Sobic009G215300 Sobic009G211900--Sobic006G124300 Sobic001G181500 Sobic001G181500 Sobic009G211900--Sobic001G181500 Sobic009G211900--Sobic006G203900 Sobic009G211900--Sobic003G135600 Sobic002G309700 Sobic002G309700 Sobic009G211900--Sobic002G309700 Sobic009G211900--Sobic008G136800 Sobic001G073600 Sobic001G073600 Sobic009G211900--Sobic001G073600 Sobic009G211900--Sobic004G260200 Sobic006G203900--Sobic008G136800 Sobic006G203900--Sobic009G211900 Sobic001G035400 Sobic001G035400 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G203900--Sobic006G124300 Sobic006G203900--Sobic003G135600 Sobic009G001900 Sobic009G001900 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic008G136800--Sobic006G203900 Sobic008G136800--Sobic009G001900 Sobic008G136800--Sobic009G211900 Sobic008G136800--Sobic007G013900 Sobic001G031800 Sobic001G031800 Sobic008G136800--Sobic001G031800 Sobic008G136800--Sobic006G124300 Sobic007G141100 Sobic007G141100 Sobic008G136800--Sobic007G141100 Sobic002G296200 Sobic002G296200 Sobic008G136800--Sobic002G296200 Sobic008G136800--Sobic003G074900 Sobic004G260200--Sobic002G309700 Sobic001G047800 Sobic001G047800 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic002G395000 Sobic002G395000 Sobic004G260200--Sobic002G395000 Sobic002G356400 Sobic002G356400 Sobic004G260200--Sobic002G356400 Sobic001G404800 Sobic001G404800 Sobic004G260200--Sobic001G404800 Sobic004G260200--Sobic009G215300 Sobic002G263100 Sobic002G263100 Sobic004G260200--Sobic002G263100 Sobic001G074700 Sobic001G074700 Sobic004G260200--Sobic001G074700 Sobic001G513500 Sobic001G513500 Sobic005G091700--Sobic001G513500 Sobic010G100000 Sobic010G100000 Sobic005G091700--Sobic010G100000 Sobic009G101700 Sobic009G101700 Sobic005G091700--Sobic009G101700 Sobic001G018800 Sobic001G018800 Sobic005G091700--Sobic001G018800 Sobic003G129800 Sobic003G129800 Sobic005G091700--Sobic003G129800 Sobic002G331300 Sobic002G331300 Sobic005G091700--Sobic002G331300 Sobic009G179100 Sobic009G179100 Sobic005G091700--Sobic009G179100 Sobic001G011200 Sobic001G011200 Sobic005G091700--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic005G091700--Sobic005G050500 Sobic002G135200 Sobic002G135200 Sobic001G030300--Sobic002G135200 Sobic001G030300--Sobic009G179100 Sobic006G261900 Sobic006G261900 Sobic001G030300--Sobic006G261900 Sobic001G030300--Sobic001G513500 Sobic010G023900 Sobic010G023900 Sobic001G030300--Sobic010G023900 Sobic001G030300--Sobic009G101700 Sobic009G119900 Sobic009G119900 Sobic001G030300--Sobic009G119900 Sobic001G030300--Sobic002G356400 Sobic001G030300--Sobic002G296200 Sobic004G155100 Sobic004G155100 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic009G191400 Sobic009G191400 Sobic003G135600--Sobic009G191400 Sobic003G135600--Sobic001G181500 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic003G074900--Sobic008G136800 Sobic003G074900--Sobic006G124300 Sobic003G074900--Sobic006G203900 Sobic002G387800 Sobic002G387800 Sobic003G074900--Sobic002G387800 Sobic003G074900--Sobic009G211900 Sobic003G016300 Sobic003G016300 Sobic003G074900--Sobic003G016300 Sobic001G219800 Sobic001G219800 Sobic003G074900--Sobic001G219800 Sobic003G074900--Sobic007G141100 Sobic003G074900--Sobic009G001900 Sobic004G170400 Sobic004G170400 Sobic001G350600--Sobic004G170400 Sobic004G259200 Sobic004G259200 Sobic001G350600--Sobic004G259200 Sobic001G350600--Sobic002G356400 Sobic001G350600--Sobic001G074700 Sobic001G350600--Sobic001G465800 Sobic003G209000 Sobic003G209000 Sobic001G350600--Sobic003G209000 Sobic001G350600--Sobic001G404800 Sobic001G350600--Sobic009G119900 Sobic004G030000 Sobic004G030000 Sobic001G350600--Sobic004G030000
Octagon: transcription factors


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