Gene annotation
Transcriptome id Sobic.003G016300.2
Synonym Sb03g001620
Functional annotation SFT2, putative, expressed
UniProt C5XKF6
Pfam PF04178
Panther DB PTHR23137
NCBI CDD KOG2887; Membrane protein involved in ER to Golgi transport
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT5G24170 : Got1/Sft2-like vescicle transport protein family
RAP-DB (Rice) LOC_Os01g11980.1 : SFT2, putative, expressed
MaizeGDB (Corn) Zm00025a035930
Brachypodium -
Barley HORVU3Hr1G029340.19 , HORVU3Hr1G029340.26 , HORVU3Hr1G029340.27 , HORVU3Hr1G029340.24 , HORVU3Hr1G029340.25 , HORVU3Hr1G029340.22 , HORVU3Hr1G029340.23 , HORVU3Hr1G029340.20 , HORVU3Hr1G029340.21 , HORVU3Hr1G029340.28 , HORVU3Hr1G029340.29 , HORVU3Hr1G029340.31 , HORVU3Hr1G029340.30 , HORVU3Hr1G029340.33 , HORVU3Hr1G029340.32 , HORVU3Hr1G029340.35 , HORVU3Hr1G029340.34 , HORVU3Hr1G029340.36 , HORVU7Hr1G066630.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
2 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
3 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
4 Sobic.001G219800 methyltransferase, putative, expressed -
5 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
6 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
7 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
8 Sobic.009G211900 expressed protein -
9 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
10 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
11 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
12 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
13 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
14 Sobic.003G074900 expressed protein -
15 Sobic.004G173700 SLL1 protein, putative, expressed -
16 Sobic.009G215300 fiber protein Fb11, putative, expressed -
17 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
18 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
19 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
20 Sobic.001G347700 protein phosphotase protein, putative, expressed -


Gene co-expression network
sample Sobic003G016300 Sobic003G016300 Sobic002G352200 Sobic002G352200 Sobic003G016300--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic003G016300--Sobic002G217500 Sobic001G192700 Sobic001G192700 Sobic003G016300--Sobic001G192700 Sobic001G219800 Sobic001G219800 Sobic003G016300--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic003G016300--Sobic008G018300 Sobic006G203900 Sobic006G203900 Sobic003G016300--Sobic006G203900 Sobic002G255400 Sobic002G255400 Sobic003G016300--Sobic002G255400 Sobic009G211900 Sobic009G211900 Sobic003G016300--Sobic009G211900 Sobic002G420600 Sobic002G420600 Sobic003G016300--Sobic002G420600 Sobic002G352200--Sobic002G420600 Sobic002G352200--Sobic003G016300 Sobic002G352200--Sobic008G018300 Sobic002G352200--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G352200--Sobic004G173700 Sobic003G260600 Sobic003G260600 Sobic002G352200--Sobic003G260600 Sobic009G224400 Sobic009G224400 Sobic002G352200--Sobic009G224400 Sobic002G124900 Sobic002G124900 Sobic002G352200--Sobic002G124900 Sobic001G073600 Sobic001G073600 Sobic002G352200--Sobic001G073600 Sobic002G217500--Sobic003G016300 Sobic002G217500--Sobic002G352200 Sobic002G217500--Sobic002G255400 Sobic006G153200 Sobic006G153200 Sobic002G217500--Sobic006G153200 Sobic002G217500--Sobic001G219800 Sobic002G217500--Sobic008G018300 Sobic002G217500--Sobic003G260600 Sobic007G023400 Sobic007G023400 Sobic002G217500--Sobic007G023400 Sobic009G218000 Sobic009G218000 Sobic002G217500--Sobic009G218000 Sobic001G192700--Sobic001G219800 Sobic001G192700--Sobic003G016300 Sobic001G352800 Sobic001G352800 Sobic001G192700--Sobic001G352800 Sobic002G232400 Sobic002G232400 Sobic001G192700--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800 Sobic001G219800--Sobic001G352800 Sobic001G219800--Sobic001G192700 Sobic001G219800--Sobic003G016300 Sobic001G219800--Sobic002G255400 Sobic001G219800--Sobic002G217500 Sobic003G074900 Sobic003G074900 Sobic001G219800--Sobic003G074900 Sobic001G219800--Sobic002G420600 Sobic001G219800--Sobic002G352200 Sobic003G075200 Sobic003G075200 Sobic001G219800--Sobic003G075200 Sobic008G018300--Sobic002G255400 Sobic008G018300--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic008G018300--Sobic001G387200 Sobic008G018300--Sobic004G173700 Sobic008G018300--Sobic002G420600 Sobic008G018300--Sobic003G260600 Sobic001G282200 Sobic001G282200 Sobic008G018300--Sobic001G282200 Sobic003G129900 Sobic003G129900 Sobic008G018300--Sobic003G129900 Sobic008G018300--Sobic003G016300 Sobic008G136800 Sobic008G136800 Sobic006G203900--Sobic008G136800 Sobic006G203900--Sobic009G211900 Sobic001G035400 Sobic001G035400 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G124300 Sobic006G124300 Sobic006G203900--Sobic006G124300 Sobic003G135600 Sobic003G135600 Sobic006G203900--Sobic003G135600 Sobic009G001900 Sobic009G001900 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic002G255400--Sobic003G260600 Sobic003G089100 Sobic003G089100 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic003G201500 Sobic003G201500 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200 Sobic009G215300 Sobic009G215300 Sobic009G211900--Sobic009G215300 Sobic009G211900--Sobic006G124300 Sobic001G181500 Sobic001G181500 Sobic009G211900--Sobic001G181500 Sobic009G211900--Sobic006G203900 Sobic009G211900--Sobic003G135600 Sobic002G309700 Sobic002G309700 Sobic009G211900--Sobic002G309700 Sobic009G211900--Sobic008G136800 Sobic009G211900--Sobic001G073600 Sobic004G260200 Sobic004G260200 Sobic009G211900--Sobic004G260200 Sobic002G420600--Sobic003G089100 Sobic002G420600--Sobic004G173700 Sobic006G120900 Sobic006G120900 Sobic002G420600--Sobic006G120900 Sobic002G420600--Sobic003G201500 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic001G303900 Sobic001G303900 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic002G420600--Sobic003G372200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.