Gene annotation
Transcriptome id Sobic.010G032600.1
Synonym Sb10g002940
Functional annotation cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed
UniProt C5Z3U6
Pfam PF01215
Panther DB PTHR10122 PTHR10122:SF3
NCBI CDD -
KEGG Orthology K02265; cytochrome c oxidase subunit 5b
Gene Ontology GO:0005740; mitochondrial envelope GO:0004129cytochrome-c oxidase activity


Orthologs (automatic annotation)
TAIR AT1G80230 : Rubredoxin-like superfamily protein
RAP-DB (Rice) LOC_Os06g05080.1 : cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK19896
Barley HORVU0Hr1G008800.1 , HORVU5Hr1G021870.1 , HORVU7Hr1G020720.6 , HORVU7Hr1G020720.7 , HORVU5Hr1G021860.1 , HORVU7Hr1G020720.8 , HORVU7Hr1G020720.9 , HORVU7Hr1G020720.21 , HORVU7Hr1G020720.20 , HORVU7Hr1G020720.23 , HORVU7Hr1G020720.22 , HORVU0Hr1G008750.1 , HORVU7Hr1G020720.10 , HORVU7Hr1G020720.11 , HORVU7Hr1G020720.12 , HORVU7Hr1G020720.13 , HORVU7Hr1G020720.14 , HORVU7Hr1G020720.15 , HORVU7Hr1G020720.16 , HORVU7Hr1G020720.17 , HORVU7Hr1G020720.18 , HORVU7Hr1G020720.19
Wheat TraesCS7A02G090900 , TraesCS7D02G086000 , TraesCS4A02G390800
Populus -


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cDNA sequences
Sobic.010G032600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
2 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
3 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
4 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
5 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
6 Sobic.002G262200 expressed protein -
7 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
8 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
9 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
10 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
11 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
12 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
13 Sobic.001G387200 expressed protein -
14 Sobic.009G215300 fiber protein Fb11, putative, expressed -
15 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
16 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
17 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
18 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
19 Sobic.003G016300 SFT2, putative, expressed -
20 Sobic.006G276700 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase


Gene co-expression network
sample Sobic010G032600 Sobic010G032600 Sobic007G023400 Sobic007G023400 Sobic010G032600--Sobic007G023400 Sobic002G395000 Sobic002G395000 Sobic010G032600--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic010G032600--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic010G032600--Sobic004G297700 Sobic001G457000 Sobic001G457000 Sobic010G032600--Sobic001G457000 Sobic002G262200 Sobic002G262200 Sobic010G032600--Sobic002G262200 Sobic001G073600 Sobic001G073600 Sobic010G032600--Sobic001G073600 Sobic009G191400 Sobic009G191400 Sobic010G032600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic010G032600--Sobic009G224400 Sobic007G023400--Sobic002G395000 Sobic007G023400--Sobic010G032600 Sobic007G023400--Sobic009G224400 Sobic007G023400--Sobic007G171500 Sobic007G023400--Sobic004G297700 Sobic003G135600 Sobic003G135600 Sobic007G023400--Sobic003G135600 Sobic004G202100 Sobic004G202100 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic007G023400--Sobic001G073600 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic007G171500--Sobic004G297700 Sobic003G034900 Sobic003G034900 Sobic007G171500--Sobic003G034900 Sobic001G458800 Sobic001G458800 Sobic007G171500--Sobic001G458800 Sobic007G171500--Sobic009G224400 Sobic007G171500--Sobic010G032600 Sobic007G171500--Sobic002G395000 Sobic006G058900 Sobic006G058900 Sobic007G171500--Sobic006G058900 Sobic007G171500--Sobic009G191400 Sobic007G171500--Sobic001G457000 Sobic004G297700--Sobic007G171500 Sobic004G297700--Sobic010G032600 Sobic006G276700 Sobic006G276700 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic004G297700--Sobic007G023400 Sobic004G297700--Sobic001G457000 Sobic004G297700--Sobic004G202100 Sobic004G297700--Sobic003G034900 Sobic007G119600 Sobic007G119600 Sobic001G457000--Sobic007G119600 Sobic004G093600 Sobic004G093600 Sobic001G457000--Sobic004G093600 Sobic004G218600 Sobic004G218600 Sobic001G457000--Sobic004G218600 Sobic009G259200 Sobic009G259200 Sobic001G457000--Sobic009G259200 Sobic001G457000--Sobic009G224400 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic001G457000--Sobic010G032600 Sobic001G457000--Sobic007G171500 Sobic004G159000 Sobic004G159000 Sobic002G262200--Sobic004G159000 Sobic002G262200--Sobic009G224400 Sobic002G262200--Sobic002G395000 Sobic002G262200--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic002G262200--Sobic004G344800 Sobic002G262200--Sobic001G073600 Sobic001G112400 Sobic001G112400 Sobic002G262200--Sobic001G112400 Sobic007G013900 Sobic007G013900 Sobic002G262200--Sobic007G013900 Sobic002G262200--Sobic009G191400 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic009G224400--Sobic001G458800 Sobic009G224400--Sobic004G155100 Sobic009G224400--Sobic003G034900 Sobic009G224400--Sobic002G262200
Octagon: transcription factors


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