Gene annotation
Transcriptome id Sobic.001G457000.1
Synonym Sb01g042930, ATP3
Functional annotation ATP synthase gamma chain, putative, expressed
UniProt C5WST3
Pfam PF00231
Panther DB PTHR11693 PTHR11693:SF22
NCBI CDD KOG1531; F0F1-type ATP synthase, gamma subunit
KEGG Orthology K02136; ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
Gene Ontology GO:0015986; ATP synthesis coupled proton transport


Orthologs (automatic annotation)
TAIR AT2G33040 : gamma subunit of Mt ATP synthase
RAP-DB (Rice) LOC_Os10g17280.1 : ATP synthase gamma chain, putative, expressed
MaizeGDB (Corn) Zm00025a001285 , Zm00025a053074
Brachypodium KQJ96558
Barley HORVU1Hr1G031600.8 , HORVU1Hr1G031600.1 , HORVU1Hr1G031600.3 , HORVU1Hr1G031600.2 , HORVU1Hr1G031600.5 , HORVU1Hr1G031600.4 , HORVU1Hr1G031600.7 , HORVU1Hr1G031600.6
Wheat TraesCS1A02G138800 , TraesCS1A02G138800 , TraesCS1B02G148500 , TraesCS1B02G148500 , TraesCS1D02G132700
Populus -


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cDNA sequences
Sobic.001G457000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
2 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
3 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
4 Sobic.009G259200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
5 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
6 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
7 Sobic.001G387200 expressed protein -
8 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
9 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
10 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
11 Sobic.003G028200 expressed protein -
12 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
13 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
14 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
15 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
16 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
17 Sobic.006G012700 expressed protein -
18 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
19 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
20 Sobic.005G145201 - K06630: 14-3-3 protein epsilon


Gene co-expression network
sample Sobic001G457000 Sobic001G457000 Sobic007G119600 Sobic007G119600 Sobic001G457000--Sobic007G119600 Sobic004G093600 Sobic004G093600 Sobic001G457000--Sobic004G093600 Sobic004G218600 Sobic004G218600 Sobic001G457000--Sobic004G218600 Sobic009G259200 Sobic009G259200 Sobic001G457000--Sobic009G259200 Sobic009G224400 Sobic009G224400 Sobic001G457000--Sobic009G224400 Sobic003G034900 Sobic003G034900 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic010G032600 Sobic010G032600 Sobic001G457000--Sobic010G032600 Sobic007G171500 Sobic007G171500 Sobic001G457000--Sobic007G171500 Sobic007G119600--Sobic009G224400 Sobic009G191400 Sobic009G191400 Sobic007G119600--Sobic009G191400 Sobic006G041800 Sobic006G041800 Sobic007G119600--Sobic006G041800 Sobic007G119600--Sobic001G457000 Sobic001G073600 Sobic001G073600 Sobic007G119600--Sobic001G073600 Sobic002G255400 Sobic002G255400 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic003G388700 Sobic003G388700 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic003G129900 Sobic003G129900 Sobic004G093600--Sobic003G129900 Sobic004G093600--Sobic001G387200 Sobic001G047600 Sobic001G047600 Sobic004G093600--Sobic001G047600 Sobic004G093600--Sobic003G034900 Sobic004G093600--Sobic001G457000 Sobic006G120900 Sobic006G120900 Sobic004G093600--Sobic006G120900 Sobic001G378800 Sobic001G378800 Sobic004G093600--Sobic001G378800 Sobic006G012700 Sobic006G012700 Sobic004G093600--Sobic006G012700 Sobic004G093600--Sobic003G260600 Sobic002G153000 Sobic002G153000 Sobic004G218600--Sobic002G153000 Sobic004G218600--Sobic001G457000 Sobic002G352200 Sobic002G352200 Sobic004G218600--Sobic002G352200 Sobic001G543400 Sobic001G543400 Sobic004G218600--Sobic001G543400 Sobic004G218600--Sobic003G260600 Sobic002G070300 Sobic002G070300 Sobic004G218600--Sobic002G070300 Sobic004G218600--Sobic002G255400 Sobic003G049200 Sobic003G049200 Sobic004G218600--Sobic003G049200 Sobic004G218600--Sobic007G119600 Sobic009G259200--Sobic001G457000 Sobic009G259200--Sobic009G224400 Sobic009G259200--Sobic003G260600 Sobic009G259200--Sobic007G119600 Sobic009G259200--Sobic003G028200 Sobic009G259200--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic009G259200--Sobic003G201500 Sobic004G173700 Sobic004G173700 Sobic009G259200--Sobic004G173700 Sobic003G089100 Sobic003G089100 Sobic009G259200--Sobic003G089100 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic002G395000 Sobic002G395000 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic009G224400--Sobic004G155100 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic003G034900--Sobic001G458800 Sobic001G465400 Sobic001G465400 Sobic003G034900--Sobic001G465400 Sobic003G034900--Sobic004G093600 Sobic001G115700 Sobic001G115700 Sobic003G034900--Sobic001G115700 Sobic003G034900--Sobic001G047600 Sobic003G034900--Sobic007G171500 Sobic003G034900--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic003G034900--Sobic004G347600 Sobic003G034900--Sobic001G457000 Sobic001G387200--Sobic003G129900 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic004G256700 Sobic004G256700 Sobic001G387200--Sobic004G256700 Sobic001G387200--Sobic002G255400 Sobic002G420600 Sobic002G420600 Sobic001G387200--Sobic002G420600 Sobic005G019100 Sobic005G019100 Sobic001G387200--Sobic005G019100 Sobic007G023400 Sobic007G023400 Sobic010G032600--Sobic007G023400 Sobic010G032600--Sobic002G395000 Sobic010G032600--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic010G032600--Sobic004G297700 Sobic010G032600--Sobic001G457000 Sobic010G032600--Sobic002G262200 Sobic010G032600--Sobic001G073600 Sobic010G032600--Sobic009G191400 Sobic010G032600--Sobic009G224400 Sobic007G171500--Sobic004G297700 Sobic007G171500--Sobic003G034900 Sobic007G171500--Sobic001G458800 Sobic007G171500--Sobic009G224400 Sobic007G171500--Sobic010G032600 Sobic007G171500--Sobic002G395000 Sobic006G058900 Sobic006G058900 Sobic007G171500--Sobic006G058900 Sobic007G171500--Sobic009G191400 Sobic007G171500--Sobic001G457000
Octagon: transcription factors


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