Gene annotation
Transcriptome id Sobic.009G259200.1
Synonym Sb09g030840
Functional annotation nucleoside diphosphate kinase, putative, expressed
UniProt A0A1B6PBB3
Pfam PF00334
Panther DB PTHR11349 PTHR11349:SF53
NCBI CDD KOG0888; Nucleoside diphosphate kinase
KEGG Orthology K00940; ndk, nucleoside-diphosphate kinase
Gene Ontology GO:0006241; CTP biosynthetic process GO:0006228UTP biosynthetic process GO:0006183GTP biosynthetic process GO:0006165nucleoside diphosphate phosphorylation GO:0004550nucleoside diphosphate kinase activity


Orthologs (automatic annotation)
TAIR AT4G23900 : Nucleoside diphosphate kinase family protein
RAP-DB (Rice) LOC_Os05g51700.1 : nucleoside diphosphate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a044802 , Zm00025a054346 , Zm00025a036824
Brachypodium KQK04550
Barley HORVU1Hr1G095400.9 , HORVU1Hr1G095400.2 , HORVU1Hr1G095400.15 , HORVU1Hr1G095400.14 , HORVU1Hr1G095400.11 , HORVU1Hr1G095400.10 , HORVU1Hr1G095400.13 , HORVU1Hr1G095400.12
Wheat TraesCS1A02G444300 , TraesCS1B02G478800 , TraesCS1D02G452300
Populus -


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cDNA sequences
Sobic.009G259200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
2 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
3 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
4 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
5 Sobic.003G028200 expressed protein -
6 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
7 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
8 Sobic.004G173700 SLL1 protein, putative, expressed -
9 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
11 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
12 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
13 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
14 Sobic.004G116400 OsFBK5 - F-box domain and kelch repeat containing protein, expressed -
15 Sobic.001G387200 expressed protein -
16 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
17 Sobic.004G244000 dehydrogenase E1 component domain containing protein, expressed K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit
18 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
19 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
20 Sobic.002G186500 UPF0041 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G259200 Sobic009G259200 Sobic001G457000 Sobic001G457000 Sobic009G259200--Sobic001G457000 Sobic009G224400 Sobic009G224400 Sobic009G259200--Sobic009G224400 Sobic003G260600 Sobic003G260600 Sobic009G259200--Sobic003G260600 Sobic007G119600 Sobic007G119600 Sobic009G259200--Sobic007G119600 Sobic003G028200 Sobic003G028200 Sobic009G259200--Sobic003G028200 Sobic002G255400 Sobic002G255400 Sobic009G259200--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic009G259200--Sobic003G201500 Sobic004G173700 Sobic004G173700 Sobic009G259200--Sobic004G173700 Sobic003G089100 Sobic003G089100 Sobic009G259200--Sobic003G089100 Sobic001G457000--Sobic007G119600 Sobic004G093600 Sobic004G093600 Sobic001G457000--Sobic004G093600 Sobic004G218600 Sobic004G218600 Sobic001G457000--Sobic004G218600 Sobic001G457000--Sobic009G259200 Sobic001G457000--Sobic009G224400 Sobic003G034900 Sobic003G034900 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic010G032600 Sobic010G032600 Sobic001G457000--Sobic010G032600 Sobic007G171500 Sobic007G171500 Sobic001G457000--Sobic007G171500 Sobic001G073600 Sobic001G073600 Sobic009G224400--Sobic001G073600 Sobic009G191400 Sobic009G191400 Sobic009G224400--Sobic009G191400 Sobic002G395000 Sobic002G395000 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic009G224400--Sobic004G155100 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic002G420600 Sobic002G420600 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic007G014700 Sobic007G014700 Sobic003G260600--Sobic007G014700 Sobic007G119600--Sobic009G224400 Sobic007G119600--Sobic009G191400 Sobic006G041800 Sobic006G041800 Sobic007G119600--Sobic006G041800 Sobic007G119600--Sobic001G457000 Sobic007G119600--Sobic001G073600 Sobic007G119600--Sobic002G255400 Sobic007G119600--Sobic003G028200 Sobic003G388700 Sobic003G388700 Sobic007G119600--Sobic003G388700 Sobic007G119600--Sobic003G260600 Sobic003G028200--Sobic009G224400 Sobic003G028200--Sobic002G255400 Sobic003G028200--Sobic003G260600 Sobic003G028200--Sobic007G119600 Sobic003G028200--Sobic009G191400 Sobic003G028200--Sobic001G457000 Sobic003G028200--Sobic001G073600 Sobic003G028200--Sobic009G259200 Sobic002G352200 Sobic002G352200 Sobic003G028200--Sobic002G352200 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200 Sobic003G201500--Sobic003G089100 Sobic003G201500--Sobic003G260600 Sobic003G201500--Sobic003G372200 Sobic003G201500--Sobic002G420600 Sobic003G201500--Sobic002G255400 Sobic003G201500--Sobic001G378800 Sobic006G120900 Sobic006G120900 Sobic003G201500--Sobic006G120900 Sobic001G400000 Sobic001G400000 Sobic003G201500--Sobic001G400000 Sobic004G038500 Sobic004G038500 Sobic003G201500--Sobic004G038500 Sobic003G137600 Sobic003G137600 Sobic004G173700--Sobic003G137600 Sobic004G173700--Sobic006G120900 Sobic004G173700--Sobic002G420600 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic004G173700--Sobic008G018300 Sobic003G089100--Sobic003G201500 Sobic003G089100--Sobic003G013700 Sobic003G089100--Sobic003G260600 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic003G089100--Sobic001G400000 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic001G356200 Sobic001G356200 Sobic003G089100--Sobic001G356200
Octagon: transcription factors


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