Gene annotation
Transcriptome id Sobic.002G259700.1
Synonym MAB1, Sb02g029470
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transketolase, putative, expressed
UniProt C5X5A2
Pfam PF02780 PF02779
Panther DB PTHR11624 PTHR11624:SF56
NCBI CDD -
KEGG Orthology K00162; PDHB, pyruvate dehydrogenase E1 component beta subunit
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity GO:0006086acetyl-CoA biosynthetic process from pyruvate GO:0004739pyruvate dehydrogenase (acetyl-transferring) activity


Orthologs (automatic annotation)
TAIR AT5G50850 : Transketolase family protein
RAP-DB (Rice) LOC_Os09g33500.1 : transketolase, putative, expressed
MaizeGDB (Corn) Zm00025a014323 , Zm00025a047598
Brachypodium KQJ90948 , KQJ99159
Barley HORVU1Hr1G013360.7 , HORVU1Hr1G013360.8 , HORVU7Hr1G055090.8 , HORVU7Hr1G055090.9 , HORVU7Hr1G055090.1 , HORVU7Hr1G055090.2 , HORVU7Hr1G055090.3 , HORVU7Hr1G055090.4 , HORVU7Hr1G055090.5 , HORVU7Hr1G055090.6 , HORVU7Hr1G055090.7 , HORVU7Hr1G039110.1 , HORVU4Hr1G032520.1 , HORVU1Hr1G013360.15 , HORVU1Hr1G013360.16 , HORVU1Hr1G013360.17 , HORVU1Hr1G013360.10 , HORVU1Hr1G013360.11 , HORVU5Hr1G077200.3 , HORVU5Hr1G077200.2 , HORVU5Hr1G077200.1 , HORVU5Hr1G077200.7 , HORVU5Hr1G077200.6 , HORVU5Hr1G077200.5 , HORVU5Hr1G077200.4
Wheat TraesCS5B02G290600 , TraesCS7B02G161100 , TraesCS7A02G263300 , TraesCS7D02G263900 , TraesCS7D02G263900 , TraesCS5A02G291500 , TraesCS5A02G291500 , TraesCS5D02G299000
Populus PNT46000 , PNT46001 , PNT46002 , PNT46003


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cDNA sequences
Sobic.002G259700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
2 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
3 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
5 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
6 Sobic.001G387200 expressed protein -
7 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
8 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
9 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
10 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
11 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
12 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
13 Sobic.006G162400 expressed protein -
14 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
15 Sobic.005G145201 - K06630: 14-3-3 protein epsilon
16 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
17 Sobic.004G176200 SacI homology domain containing protein, expressed -
18 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
20 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G259700 Sobic002G259700 Sobic001G356200 Sobic001G356200 Sobic002G259700--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G259700--Sobic003G201500 Sobic003G089100 Sobic003G089100 Sobic002G259700--Sobic003G089100 Sobic002G054700 Sobic002G054700 Sobic002G259700--Sobic002G054700 Sobic006G120900 Sobic006G120900 Sobic002G259700--Sobic006G120900 Sobic001G387200 Sobic001G387200 Sobic002G259700--Sobic001G387200 Sobic002G255400 Sobic002G255400 Sobic002G259700--Sobic002G255400 Sobic004G107100 Sobic004G107100 Sobic002G259700--Sobic004G107100 Sobic002G397900 Sobic002G397900 Sobic002G259700--Sobic002G397900 Sobic004G113600 Sobic004G113600 Sobic001G356200--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic001G356200--Sobic001G400000 Sobic003G385300 Sobic003G385300 Sobic001G356200--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic001G356200--Sobic007G039200 Sobic001G424800 Sobic001G424800 Sobic001G356200--Sobic001G424800 Sobic001G356200--Sobic004G107100 Sobic001G356200--Sobic003G089100 Sobic003G117800 Sobic003G117800 Sobic001G356200--Sobic003G117800 Sobic006G134500 Sobic006G134500 Sobic001G356200--Sobic006G134500 Sobic003G201500--Sobic003G089100 Sobic003G260600 Sobic003G260600 Sobic003G201500--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic003G201500--Sobic003G372200 Sobic002G420600 Sobic002G420600 Sobic003G201500--Sobic002G420600 Sobic003G201500--Sobic002G255400 Sobic001G378800 Sobic001G378800 Sobic003G201500--Sobic001G378800 Sobic003G201500--Sobic006G120900 Sobic003G201500--Sobic001G400000 Sobic004G038500 Sobic004G038500 Sobic003G201500--Sobic004G038500 Sobic003G089100--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic003G089100--Sobic003G013700 Sobic003G089100--Sobic003G260600 Sobic003G089100--Sobic002G255400 Sobic003G089100--Sobic004G113600 Sobic003G089100--Sobic001G400000 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic003G089100--Sobic001G356200 Sobic002G054700--Sobic002G397900 Sobic002G054700--Sobic002G259700 Sobic004G116400 Sobic004G116400 Sobic002G054700--Sobic004G116400 Sobic002G054700--Sobic002G255400 Sobic002G054700--Sobic003G089100 Sobic002G054700--Sobic003G201500 Sobic006G041800 Sobic006G041800 Sobic002G054700--Sobic006G041800 Sobic001G188000 Sobic001G188000 Sobic002G054700--Sobic001G188000 Sobic002G054700--Sobic003G260600 Sobic004G173700 Sobic004G173700 Sobic006G120900--Sobic004G173700 Sobic003G234500 Sobic003G234500 Sobic006G120900--Sobic003G234500 Sobic006G120900--Sobic003G089100 Sobic003G129900 Sobic003G129900 Sobic006G120900--Sobic003G129900 Sobic003G380300 Sobic003G380300 Sobic006G120900--Sobic003G380300 Sobic003G212000 Sobic003G212000 Sobic006G120900--Sobic003G212000 Sobic006G120900--Sobic001G387200 Sobic006G120900--Sobic002G420600 Sobic003G137600 Sobic003G137600 Sobic006G120900--Sobic003G137600 Sobic001G387200--Sobic003G129900 Sobic004G093600 Sobic004G093600 Sobic001G387200--Sobic004G093600 Sobic001G387200--Sobic006G120900 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic004G256700 Sobic004G256700 Sobic001G387200--Sobic004G256700 Sobic001G387200--Sobic002G255400 Sobic001G387200--Sobic002G420600 Sobic005G019100 Sobic005G019100 Sobic001G387200--Sobic005G019100 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic002G255400--Sobic003G013700 Sobic002G352200 Sobic002G352200 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200 Sobic010G173300 Sobic010G173300 Sobic004G107100--Sobic010G173300 Sobic004G107100--Sobic004G113600 Sobic003G244400 Sobic003G244400 Sobic004G107100--Sobic003G244400 Sobic001G384200 Sobic001G384200 Sobic004G107100--Sobic001G384200 Sobic006G267100 Sobic006G267100 Sobic004G107100--Sobic006G267100 Sobic001G414650 Sobic001G414650 Sobic004G107100--Sobic001G414650 Sobic004G107100--Sobic001G400000 Sobic001G112600 Sobic001G112600 Sobic004G107100--Sobic001G112600 Sobic001G387300 Sobic001G387300 Sobic004G107100--Sobic001G387300 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G414800 Sobic002G414800 Sobic002G397900--Sobic002G414800 Sobic002G397900--Sobic002G054700 Sobic002G397900--Sobic001G356200 Sobic002G397900--Sobic003G201500
Octagon: transcription factors


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