Gene annotation
Transcriptome id Sobic.002G054700.1
Synonym TSA1, TRP3, Sb02g004580
Functional annotation indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
UniProt C5XB29
Pfam PF00290
Panther DB PTHR10314 PTHR10314:SF120
NCBI CDD KOG4175; Tryptophan synthase alpha chain
KEGG Orthology K01695; tryptophan synthase alpha chain
Gene Ontology GO:0006568; tryptophan metabolic process GO:0004834tryptophan synthase activity


Orthologs (automatic annotation)
TAIR AT4G02610 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os07g08430.1 : indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045191 , Zm00025a033759
Brachypodium -
Barley -
Wheat TraesCS1B02G463100 , TraesCS1D02G437700 , TraesCS1A02G428400 , TraesCS1A02G428400
Populus -


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cDNA sequences
Sobic.002G054700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
2 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
3 Sobic.004G116400 OsFBK5 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
5 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
7 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
8 Sobic.001G188000 SAM-dependent methyltransferase, putative, expressed -
9 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
10 Sobic.009G259200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
11 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
12 Sobic.003G284100 expressed protein -
13 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
14 Sobic.001G387200 expressed protein -
15 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
16 Sobic.008G022400 EMB2748, putative, expressed -
17 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
18 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
19 Sobic.003G202400 expressed protein -
20 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1


Gene co-expression network
sample Sobic002G054700 Sobic002G054700 Sobic002G397900 Sobic002G397900 Sobic002G054700--Sobic002G397900 Sobic002G259700 Sobic002G259700 Sobic002G054700--Sobic002G259700 Sobic004G116400 Sobic004G116400 Sobic002G054700--Sobic004G116400 Sobic002G255400 Sobic002G255400 Sobic002G054700--Sobic002G255400 Sobic003G089100 Sobic003G089100 Sobic002G054700--Sobic003G089100 Sobic003G201500 Sobic003G201500 Sobic002G054700--Sobic003G201500 Sobic006G041800 Sobic006G041800 Sobic002G054700--Sobic006G041800 Sobic001G188000 Sobic001G188000 Sobic002G054700--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic002G054700--Sobic003G260600 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic001G280500 Sobic001G280500 Sobic002G397900--Sobic001G280500 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G414800 Sobic002G414800 Sobic002G397900--Sobic002G414800 Sobic002G397900--Sobic002G054700 Sobic001G356200 Sobic001G356200 Sobic002G397900--Sobic001G356200 Sobic002G397900--Sobic003G201500 Sobic002G259700--Sobic001G356200 Sobic002G259700--Sobic003G201500 Sobic002G259700--Sobic003G089100 Sobic002G259700--Sobic002G054700 Sobic006G120900 Sobic006G120900 Sobic002G259700--Sobic006G120900 Sobic001G387200 Sobic001G387200 Sobic002G259700--Sobic001G387200 Sobic002G259700--Sobic002G255400 Sobic004G107100 Sobic004G107100 Sobic002G259700--Sobic004G107100 Sobic002G259700--Sobic002G397900 Sobic001G400000 Sobic001G400000 Sobic004G116400--Sobic001G400000 Sobic004G046800 Sobic004G046800 Sobic004G116400--Sobic004G046800 Sobic005G050400 Sobic005G050400 Sobic004G116400--Sobic005G050400 Sobic004G145701 Sobic004G145701 Sobic004G116400--Sobic004G145701 Sobic001G112600 Sobic001G112600 Sobic004G116400--Sobic001G112600 Sobic004G116400--Sobic002G054700 Sobic008G120920 Sobic008G120920 Sobic004G116400--Sobic008G120920 Sobic008G054700 Sobic008G054700 Sobic004G116400--Sobic008G054700 Sobic004G113600 Sobic004G113600 Sobic004G116400--Sobic004G113600 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G420600 Sobic002G420600 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G352200 Sobic002G352200 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200 Sobic003G089100--Sobic003G201500 Sobic003G089100--Sobic003G013700 Sobic003G089100--Sobic003G260600 Sobic003G089100--Sobic002G255400 Sobic003G089100--Sobic004G113600 Sobic003G089100--Sobic001G400000 Sobic003G089100--Sobic002G420600 Sobic003G089100--Sobic005G050400 Sobic003G089100--Sobic001G356200 Sobic003G201500--Sobic003G089100 Sobic003G201500--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic003G201500--Sobic003G372200 Sobic003G201500--Sobic002G420600 Sobic003G201500--Sobic002G255400 Sobic001G378800 Sobic001G378800 Sobic003G201500--Sobic001G378800 Sobic003G201500--Sobic006G120900 Sobic003G201500--Sobic001G400000 Sobic004G038500 Sobic004G038500 Sobic003G201500--Sobic004G038500 Sobic007G119600 Sobic007G119600 Sobic006G041800--Sobic007G119600 Sobic001G008100 Sobic001G008100 Sobic006G041800--Sobic001G008100 Sobic003G276100 Sobic003G276100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic002G276800 Sobic002G276800 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic003G388700 Sobic003G388700 Sobic006G041800--Sobic003G388700 Sobic001G387800 Sobic001G387800 Sobic006G041800--Sobic001G387800 Sobic006G041800--Sobic002G255400 Sobic010G069500 Sobic010G069500 Sobic001G188000--Sobic010G069500 Sobic001G188000--Sobic002G414800 Sobic004G328100 Sobic004G328100 Sobic001G188000--Sobic004G328100 Sobic002G348400 Sobic002G348400 Sobic001G188000--Sobic002G348400 Sobic001G188000--Sobic001G280500 Sobic001G309200 Sobic001G309200 Sobic001G188000--Sobic001G309200 Sobic001G188000--Sobic002G397900 Sobic001G131900 Sobic001G131900 Sobic001G188000--Sobic001G131900 Sobic002G304500 Sobic002G304500 Sobic001G188000--Sobic002G304500 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic003G260600--Sobic001G378800 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700
Octagon: transcription factors


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