Gene annotation
Transcriptome id Sobic.001G188000.1
Synonym Sb01g016520
Functional annotation SAM-dependent methyltransferase, putative, expressed
UniProt C5WV77
Pfam PF05050
Panther DB PTHR34203 PTHR34203:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26680 : -
RAP-DB (Rice) LOC_Os03g36910.1 : SAM-dependent methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a017389 , Zm00025a006233
Brachypodium PNT62592
Barley HORVU5Hr1G082700.2 , HORVU5Hr1G082700.3 , HORVU5Hr1G082700.1 , HORVU5Hr1G082700.6 , HORVU5Hr1G082700.4 , HORVU5Hr1G082700.5
Wheat TraesCS5A02G325300 , TraesCS5D02G331500 , TraesCS5B02G325400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G069500 zinc ion binding protein, putative, expressed -
2 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
3 Sobic.004G328100 expressed protein -
4 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
5 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
6 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
7 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
8 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
9 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
10 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
11 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
13 Sobic.002G392400 expressed protein -
14 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
15 Sobic.001G305900 GTP binding protein, putative, expressed -
16 Sobic.003G284100 expressed protein -
17 Sobic.001G080800 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
18 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
19 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
20 Sobic.008G022400 EMB2748, putative, expressed -


Gene co-expression network
sample Sobic001G188000 Sobic001G188000 Sobic010G069500 Sobic010G069500 Sobic001G188000--Sobic010G069500 Sobic002G414800 Sobic002G414800 Sobic001G188000--Sobic002G414800 Sobic004G328100 Sobic004G328100 Sobic001G188000--Sobic004G328100 Sobic002G348400 Sobic002G348400 Sobic001G188000--Sobic002G348400 Sobic001G280500 Sobic001G280500 Sobic001G188000--Sobic001G280500 Sobic001G309200 Sobic001G309200 Sobic001G188000--Sobic001G309200 Sobic002G397900 Sobic002G397900 Sobic001G188000--Sobic002G397900 Sobic001G131900 Sobic001G131900 Sobic001G188000--Sobic001G131900 Sobic002G304500 Sobic002G304500 Sobic001G188000--Sobic002G304500 Sobic010G069500--Sobic001G188000 Sobic010G069500--Sobic004G328100 Sobic003G308300 Sobic003G308300 Sobic010G069500--Sobic003G308300 Sobic004G329201 Sobic004G329201 Sobic010G069500--Sobic004G329201 Sobic010G069500--Sobic002G304500 Sobic002G377900 Sobic002G377900 Sobic010G069500--Sobic002G377900 Sobic003G255700 Sobic003G255700 Sobic010G069500--Sobic003G255700 Sobic010G153400 Sobic010G153400 Sobic010G069500--Sobic010G153400 Sobic001G306800 Sobic001G306800 Sobic010G069500--Sobic001G306800 Sobic001G384200 Sobic001G384200 Sobic002G414800--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic002G414800--Sobic008G166100 Sobic002G414800--Sobic001G280500 Sobic006G265800 Sobic006G265800 Sobic002G414800--Sobic006G265800 Sobic006G134500 Sobic006G134500 Sobic002G414800--Sobic006G134500 Sobic001G400000 Sobic001G400000 Sobic002G414800--Sobic001G400000 Sobic004G007400 Sobic004G007400 Sobic002G414800--Sobic004G007400 Sobic001G387300 Sobic001G387300 Sobic002G414800--Sobic001G387300 Sobic002G362500 Sobic002G362500 Sobic002G414800--Sobic002G362500 Sobic004G328100--Sobic002G304500 Sobic002G382100 Sobic002G382100 Sobic004G328100--Sobic002G382100 Sobic008G007800 Sobic008G007800 Sobic004G328100--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic004G328100--Sobic002G361500 Sobic005G201200 Sobic005G201200 Sobic004G328100--Sobic005G201200 Sobic004G328100--Sobic002G377900 Sobic002G016000 Sobic002G016000 Sobic004G328100--Sobic002G016000 Sobic001G080800 Sobic001G080800 Sobic004G328100--Sobic001G080800 Sobic010G198400 Sobic010G198400 Sobic004G328100--Sobic010G198400 Sobic002G348400--Sobic010G153400 Sobic002G392400 Sobic002G392400 Sobic002G348400--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic002G348400--Sobic007G086600 Sobic001G117900 Sobic001G117900 Sobic002G348400--Sobic001G117900 Sobic001G305900 Sobic001G305900 Sobic002G348400--Sobic001G305900 Sobic002G348400--Sobic001G309200 Sobic002G348400--Sobic001G280500 Sobic003G004800 Sobic003G004800 Sobic002G348400--Sobic003G004800 Sobic002G348400--Sobic001G188000 Sobic001G280500--Sobic002G414800 Sobic001G149000 Sobic001G149000 Sobic001G280500--Sobic001G149000 Sobic005G063200 Sobic005G063200 Sobic001G280500--Sobic005G063200 Sobic001G280500--Sobic001G384200 Sobic001G280500--Sobic008G166100 Sobic008G022400 Sobic008G022400 Sobic001G280500--Sobic008G022400 Sobic010G160300 Sobic010G160300 Sobic001G280500--Sobic010G160300 Sobic001G424800 Sobic001G424800 Sobic001G280500--Sobic001G424800 Sobic001G280500--Sobic006G265800 Sobic001G309200--Sobic002G348400 Sobic001G309200--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic001G309200--Sobic003G260600 Sobic001G309200--Sobic001G117900 Sobic009G066200 Sobic009G066200 Sobic001G309200--Sobic009G066200 Sobic002G308000 Sobic002G308000 Sobic001G309200--Sobic002G308000 Sobic001G309200--Sobic002G392400 Sobic001G309200--Sobic010G153400 Sobic001G309200--Sobic007G086600 Sobic003G349900 Sobic003G349900 Sobic002G397900--Sobic003G349900 Sobic002G397900--Sobic001G280500 Sobic003G089100 Sobic003G089100 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G213900 Sobic002G213900 Sobic002G397900--Sobic002G213900 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic001G356200 Sobic001G356200 Sobic002G397900--Sobic001G356200 Sobic003G201500 Sobic003G201500 Sobic002G397900--Sobic003G201500 Sobic003G293400 Sobic003G293400 Sobic001G131900--Sobic003G293400 Sobic003G352900 Sobic003G352900 Sobic001G131900--Sobic003G352900 Sobic004G038400 Sobic004G038400 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G385300 Sobic001G385300 Sobic001G131900--Sobic001G385300 Sobic005G045800 Sobic005G045800 Sobic001G131900--Sobic005G045800 Sobic004G298600 Sobic004G298600 Sobic001G131900--Sobic004G298600 Sobic002G420100 Sobic002G420100 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic004G064800 Sobic004G064800 Sobic002G304500--Sobic004G064800 Sobic002G304500--Sobic005G201200 Sobic002G304500--Sobic008G007800 Sobic010G255400 Sobic010G255400 Sobic002G304500--Sobic010G255400 Sobic002G304500--Sobic002G016000 Sobic006G199500 Sobic006G199500 Sobic002G304500--Sobic006G199500 Sobic002G304500--Sobic004G328100 Sobic008G007700 Sobic008G007700 Sobic002G304500--Sobic008G007700 Sobic002G304500--Sobic004G038400
Octagon: transcription factors


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