Gene annotation
Transcriptome id Sobic.001G080800.1
Synonym Sb01g007280
Functional annotation oxidoreductase, putative, expressed
UniProt C5X045
Pfam PF13640
Panther DB PTHR10869 PTHR10869:SF66
NCBI CDD -
KEGG Orthology K00472; prolyl 4-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G33910 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os03g55380.1 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a008260
Brachypodium PNT74097 , KQK13069 , KQK13068 , KQK13067 , KQK13065 , KQK13070
Barley -
Wheat TraesCS5D02G409900 , TraesCS5D02G409900 , TraesCS5D02G409900 , TraesCS5A02G400000 , TraesCS5B02G404800 , TraesCS5B02G404800
Populus -


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cDNA sequences
Sobic.001G080800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485000 expressed protein -
2 Sobic.003G217800 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
3 Sobic.009G017600 cupin domain containing protein, expressed -
4 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
5 Sobic.004G328100 expressed protein -
6 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
7 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
8 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
9 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
10 Sobic.008G054700 growth regulator related protein, putative, expressed -
11 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -
12 Sobic.009G240500 lipase class 3 family protein, putative, expressed -
13 Sobic.003G018000 expressed protein -
14 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.004G145701 - K02978: RP-S27e, small subunit ribosomal protein S27e
16 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
17 Sobic.003G258100 dynamin family protein, putative, expressed -
18 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
19 Sobic.004G038500 cyclin-related protein, putative, expressed -
20 Sobic.008G124600 expressed protein -


Gene co-expression network
sample Sobic001G080800 Sobic001G080800 Sobic001G485000 Sobic001G485000 Sobic001G080800--Sobic001G485000 Sobic003G217800 Sobic003G217800 Sobic001G080800--Sobic003G217800 Sobic009G017600 Sobic009G017600 Sobic001G080800--Sobic009G017600 Sobic007G144100 Sobic007G144100 Sobic001G080800--Sobic007G144100 Sobic004G328100 Sobic004G328100 Sobic001G080800--Sobic004G328100 Sobic003G352900 Sobic003G352900 Sobic001G080800--Sobic003G352900 Sobic005G045800 Sobic005G045800 Sobic001G080800--Sobic005G045800 Sobic003G349900 Sobic003G349900 Sobic001G080800--Sobic003G349900 Sobic002G414800 Sobic002G414800 Sobic001G080800--Sobic002G414800 Sobic001G015000 Sobic001G015000 Sobic001G485000--Sobic001G015000 Sobic001G103600 Sobic001G103600 Sobic001G485000--Sobic001G103600 Sobic009G240500 Sobic009G240500 Sobic001G485000--Sobic009G240500 Sobic008G095500 Sobic008G095500 Sobic001G485000--Sobic008G095500 Sobic003G018000 Sobic003G018000 Sobic001G485000--Sobic003G018000 Sobic001G242200 Sobic001G242200 Sobic001G485000--Sobic001G242200 Sobic004G002700 Sobic004G002700 Sobic001G485000--Sobic004G002700 Sobic002G013550 Sobic002G013550 Sobic001G485000--Sobic002G013550 Sobic009G149100 Sobic009G149100 Sobic001G485000--Sobic009G149100 Sobic003G217800--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic003G217800--Sobic003G258100 Sobic003G217800--Sobic003G352900 Sobic002G299500 Sobic002G299500 Sobic003G217800--Sobic002G299500 Sobic003G217800--Sobic003G018000 Sobic001G485700 Sobic001G485700 Sobic003G217800--Sobic001G485700 Sobic009G220700 Sobic009G220700 Sobic003G217800--Sobic009G220700 Sobic004G062600 Sobic004G062600 Sobic003G217800--Sobic004G062600 Sobic010G263400 Sobic010G263400 Sobic003G217800--Sobic010G263400 Sobic009G017600--Sobic001G103600 Sobic009G017600--Sobic001G015000 Sobic009G017600--Sobic004G002700 Sobic009G017600--Sobic008G095500 Sobic004G003300 Sobic004G003300 Sobic009G017600--Sobic004G003300 Sobic001G518900 Sobic001G518900 Sobic009G017600--Sobic001G518900 Sobic009G017600--Sobic009G149100 Sobic004G217100 Sobic004G217100 Sobic009G017600--Sobic004G217100 Sobic002G097200 Sobic002G097200 Sobic009G017600--Sobic002G097200 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic001G076600 Sobic001G076600 Sobic007G144100--Sobic001G076600 Sobic007G144100--Sobic003G217800 Sobic010G058300 Sobic010G058300 Sobic007G144100--Sobic010G058300 Sobic001G506400 Sobic001G506400 Sobic007G144100--Sobic001G506400 Sobic007G144100--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic007G144100--Sobic004G045632 Sobic004G038400 Sobic004G038400 Sobic007G144100--Sobic004G038400 Sobic002G304500 Sobic002G304500 Sobic004G328100--Sobic002G304500 Sobic002G382100 Sobic002G382100 Sobic004G328100--Sobic002G382100 Sobic008G007800 Sobic008G007800 Sobic004G328100--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic004G328100--Sobic002G361500 Sobic005G201200 Sobic005G201200 Sobic004G328100--Sobic005G201200 Sobic002G377900 Sobic002G377900 Sobic004G328100--Sobic002G377900 Sobic002G016000 Sobic002G016000 Sobic004G328100--Sobic002G016000 Sobic004G328100--Sobic001G080800 Sobic010G198400 Sobic010G198400 Sobic004G328100--Sobic010G198400 Sobic003G352900--Sobic007G144100 Sobic003G352900--Sobic002G299500 Sobic003G352900--Sobic001G076600 Sobic003G376900 Sobic003G376900 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic003G352900--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G352900--Sobic009G163100 Sobic001G385300 Sobic001G385300 Sobic003G352900--Sobic001G385300 Sobic008G007600 Sobic008G007600 Sobic003G352900--Sobic008G007600 Sobic005G045800--Sobic003G352900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic005G045800--Sobic002G299500 Sobic001G131900 Sobic001G131900 Sobic005G045800--Sobic001G131900 Sobic003G200000 Sobic003G200000 Sobic005G045800--Sobic003G200000 Sobic008G171900 Sobic008G171900 Sobic005G045800--Sobic008G171900 Sobic005G045800--Sobic009G163100 Sobic005G045800--Sobic007G144100 Sobic004G279200 Sobic004G279200 Sobic003G349900--Sobic004G279200 Sobic006G267100 Sobic006G267100 Sobic003G349900--Sobic006G267100 Sobic004G038500 Sobic004G038500 Sobic003G349900--Sobic004G038500 Sobic009G242600 Sobic009G242600 Sobic003G349900--Sobic009G242600 Sobic006G070564 Sobic006G070564 Sobic003G349900--Sobic006G070564 Sobic002G389600 Sobic002G389600 Sobic003G349900--Sobic002G389600 Sobic003G211800 Sobic003G211800 Sobic003G349900--Sobic003G211800 Sobic001G414650 Sobic001G414650 Sobic003G349900--Sobic001G414650 Sobic002G362500 Sobic002G362500 Sobic003G349900--Sobic002G362500 Sobic001G384200 Sobic001G384200 Sobic002G414800--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic002G414800--Sobic008G166100 Sobic001G280500 Sobic001G280500 Sobic002G414800--Sobic001G280500 Sobic006G265800 Sobic006G265800 Sobic002G414800--Sobic006G265800 Sobic006G134500 Sobic006G134500 Sobic002G414800--Sobic006G134500 Sobic001G400000 Sobic001G400000 Sobic002G414800--Sobic001G400000 Sobic004G007400 Sobic004G007400 Sobic002G414800--Sobic004G007400 Sobic001G387300 Sobic001G387300 Sobic002G414800--Sobic001G387300 Sobic002G414800--Sobic002G362500
Octagon: transcription factors


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