Gene annotation
Transcriptome id Sobic.002G304500.2,Sobic.002G304500.1,Sobic.002G304500.3
Synonym ATMSH4, MSH4
Functional annotation mutS family domain IV containing protein, expressed
UniProt A0A1B6QE92 , A0A1W0W6D7 , C5X8J8
Pfam PF05190 PF05192 PF00488 PF05190 PF00488
Panther DB PTHR11361 PTHR11361:SF21
NCBI CDD -
KEGG Orthology K08740; DNA mismatch repair protein MSH4
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G17380 : MUTS-like protein 4
RAP-DB (Rice) LOC_Os07g30240.1 : mutS family domain IV containing protein, expressed
MaizeGDB (Corn) Zm00025a014661
Brachypodium KQK16201 , KQK16202 , KQK16203 , KQK16204
Barley HORVU2Hr1G031870.39 , HORVU2Hr1G031870.38 , HORVU2Hr1G031870.33 , HORVU2Hr1G031870.32 , HORVU2Hr1G031870.31 , HORVU2Hr1G031870.30 , HORVU2Hr1G031870.36 , HORVU2Hr1G031870.35 , HORVU2Hr1G031870.28 , HORVU2Hr1G031870.20 , HORVU2Hr1G031870.21 , HORVU2Hr1G031870.24 , HORVU2Hr1G031870.25 , HORVU2Hr1G031870.26 , HORVU2Hr1G031870.27 , HORVU2Hr1G031870.9 , HORVU2Hr1G031870.3 , HORVU2Hr1G031870.2 , HORVU2Hr1G031870.5 , HORVU2Hr1G031870.7 , HORVU2Hr1G031870.19 , HORVU2Hr1G031870.18 , HORVU2Hr1G031870.15 , HORVU2Hr1G031870.14 , HORVU2Hr1G031870.17 , HORVU2Hr1G031870.16 , HORVU2Hr1G031870.11 , HORVU2Hr1G031870.10 , HORVU2Hr1G031870.13 , HORVU2Hr1G031870.12 , HORVU2Hr1G031870.8 , HORVU2Hr1G031870.4
Wheat TraesCS2B02G198300 , TraesCS2A02G171900
Populus -


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cDNA sequences
Sobic.002G304500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G064800 haemolysin-III, putative, expressed K07297: adiponectin receptor
2 Sobic.005G201200 - -
3 Sobic.008G007800 - -
4 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
5 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
6 Sobic.006G199500 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
7 Sobic.004G328100 expressed protein -
8 Sobic.008G007700 expressed protein -
9 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
10 Sobic.010G198400 expressed protein -
11 Sobic.009G048700 expressed protein -
12 Sobic.006G038700 - -
13 Sobic.009G006700 vacuolar ATP synthase, putative, expressed K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
14 Sobic.002G066700 OsFBL33 - F-box domain and LRR containing protein, expressed -
15 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
16 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
17 Sobic.002G158300 ankyrin, putative, expressed -
18 Sobic.005G173700 - -
19 Sobic.002G361500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Indole-acetic acid (IAA)-amido synthetase(PubMedID : 30367619)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
20 Sobic.002G060400 OsFBX237 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G304500 Sobic002G304500 Sobic004G064800 Sobic004G064800 Sobic002G304500--Sobic004G064800 Sobic005G201200 Sobic005G201200 Sobic002G304500--Sobic005G201200 Sobic008G007800 Sobic008G007800 Sobic002G304500--Sobic008G007800 Sobic010G255400 Sobic010G255400 Sobic002G304500--Sobic010G255400 Sobic002G016000 Sobic002G016000 Sobic002G304500--Sobic002G016000 Sobic006G199500 Sobic006G199500 Sobic002G304500--Sobic006G199500 Sobic004G328100 Sobic004G328100 Sobic002G304500--Sobic004G328100 Sobic008G007700 Sobic008G007700 Sobic002G304500--Sobic008G007700 Sobic004G038400 Sobic004G038400 Sobic002G304500--Sobic004G038400 Sobic004G064800--Sobic008G007800 Sobic004G064800--Sobic002G304500 Sobic004G064800--Sobic005G201200 Sobic004G064800--Sobic010G255400 Sobic004G064800--Sobic006G199500 Sobic009G048700 Sobic009G048700 Sobic004G064800--Sobic009G048700 Sobic004G064800--Sobic008G007700 Sobic004G064800--Sobic002G016000 Sobic009G006700 Sobic009G006700 Sobic004G064800--Sobic009G006700 Sobic005G201200--Sobic002G016000 Sobic005G201200--Sobic008G007800 Sobic006G038700 Sobic006G038700 Sobic005G201200--Sobic006G038700 Sobic005G201200--Sobic004G064800 Sobic005G201200--Sobic009G006700 Sobic005G201200--Sobic010G255400 Sobic002G066700 Sobic002G066700 Sobic005G201200--Sobic002G066700 Sobic005G201200--Sobic002G304500 Sobic002G147400 Sobic002G147400 Sobic005G201200--Sobic002G147400 Sobic008G007800--Sobic004G064800 Sobic008G007800--Sobic005G201200 Sobic008G007800--Sobic009G048700 Sobic008G007800--Sobic006G199500 Sobic008G007800--Sobic009G006700 Sobic009G145000 Sobic009G145000 Sobic008G007800--Sobic009G145000 Sobic008G007800--Sobic010G255400 Sobic002G243400 Sobic002G243400 Sobic008G007800--Sobic002G243400 Sobic009G008000 Sobic009G008000 Sobic008G007800--Sobic009G008000 Sobic010G255400--Sobic008G007800 Sobic010G255400--Sobic004G064800 Sobic010G255400--Sobic005G201200 Sobic010G255400--Sobic002G016000 Sobic008G041300 Sobic008G041300 Sobic010G255400--Sobic008G041300 Sobic010G255400--Sobic002G304500 Sobic001G076600 Sobic001G076600 Sobic010G255400--Sobic001G076600 Sobic002G158300 Sobic002G158300 Sobic010G255400--Sobic002G158300 Sobic010G255400--Sobic006G199500 Sobic002G016000--Sobic005G201200 Sobic002G016000--Sobic006G038700 Sobic002G016000--Sobic008G041300 Sobic002G016000--Sobic010G255400 Sobic002G016000--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic002G016000--Sobic002G361500 Sobic001G117701 Sobic001G117701 Sobic002G016000--Sobic001G117701 Sobic002G016000--Sobic004G064800 Sobic002G016000--Sobic009G006700 Sobic006G199500--Sobic009G048700 Sobic006G199500--Sobic009G008000 Sobic002G097200 Sobic002G097200 Sobic006G199500--Sobic002G097200 Sobic001G417700 Sobic001G417700 Sobic006G199500--Sobic001G417700 Sobic006G199500--Sobic009G145000 Sobic006G199500--Sobic002G243400 Sobic004G020200 Sobic004G020200 Sobic006G199500--Sobic004G020200 Sobic001G136000 Sobic001G136000 Sobic006G199500--Sobic001G136000 Sobic008G155700 Sobic008G155700 Sobic006G199500--Sobic008G155700 Sobic004G328100--Sobic002G304500 Sobic002G382100 Sobic002G382100 Sobic004G328100--Sobic002G382100 Sobic004G328100--Sobic008G007800 Sobic004G328100--Sobic002G361500 Sobic004G328100--Sobic005G201200 Sobic002G377900 Sobic002G377900 Sobic004G328100--Sobic002G377900 Sobic004G328100--Sobic002G016000 Sobic001G080800 Sobic001G080800 Sobic004G328100--Sobic001G080800 Sobic010G198400 Sobic010G198400 Sobic004G328100--Sobic010G198400 Sobic008G007700--Sobic008G007800 Sobic008G007700--Sobic004G064800 Sobic008G007700--Sobic009G048700 Sobic008G007700--Sobic006G199500 Sobic003G218000 Sobic003G218000 Sobic008G007700--Sobic003G218000 Sobic008G007700--Sobic010G198400 Sobic008G007700--Sobic009G008000 Sobic010G038000 Sobic010G038000 Sobic008G007700--Sobic010G038000 Sobic008G007700--Sobic009G145000 Sobic005G173700 Sobic005G173700 Sobic004G038400--Sobic005G173700 Sobic004G038400--Sobic009G048700 Sobic004G038400--Sobic001G076600 Sobic004G168900 Sobic004G168900 Sobic004G038400--Sobic004G168900 Sobic003G005700 Sobic003G005700 Sobic004G038400--Sobic003G005700 Sobic007G144100 Sobic007G144100 Sobic004G038400--Sobic007G144100 Sobic004G038400--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic004G038400--Sobic008G056600 Sobic009G002100 Sobic009G002100 Sobic004G038400--Sobic009G002100
Octagon: transcription factors


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