Gene annotation
Transcriptome id Sobic.008G041300.2,Sobic.008G041300.1,Sobic.008G041300.4,Sobic.008G041300.5,Sobic.008G041300.3
Synonym Sb08g003560
Functional annotation -
UniProt A0A1Z5R5L0 , A0A1Z5R4P3 , A0A1Z5R4N9 , A0A1B6PB63 , A0A1Z5R4P0
Pfam PF00271 PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF78
NCBI CDD KOG0340; ATP-dependent RNA helicase KOG0330ATP-dependent RNA helicase
KEGG Orthology K14777; DDX47, ATP-dependent RNA helicase DDX47/RRP3
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G60990 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os03g46610.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
2 Sobic.005G201200 - -
3 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
4 Sobic.008G007800 - -
5 Sobic.006G254400 expressed protein -
6 Sobic.001G117701 - -
7 Sobic.001G075201 - -
8 Sobic.010G038000 ATP-binding region, ATPase-like domain containing protein, expressed -
9 Sobic.009G002100 expressed protein -
10 Sobic.006G038700 - -
11 Sobic.010G198400 expressed protein -
12 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
13 Sobic.005G173700 - -
14 Sobic.006G199500 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
15 Sobic.004G064800 haemolysin-III, putative, expressed K07297: adiponectin receptor
16 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
17 Sobic.009G006700 vacuolar ATP synthase, putative, expressed K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
18 Sobic.002G158300 ankyrin, putative, expressed -
19 Sobic.010G051800 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.002G361500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Indole-acetic acid (IAA)-amido synthetase(PubMedID : 30367619)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family


Gene co-expression network
sample Sobic008G041300 Sobic008G041300 Sobic002G016000 Sobic002G016000 Sobic008G041300--Sobic002G016000 Sobic005G201200 Sobic005G201200 Sobic008G041300--Sobic005G201200 Sobic010G255400 Sobic010G255400 Sobic008G041300--Sobic010G255400 Sobic008G007800 Sobic008G007800 Sobic008G041300--Sobic008G007800 Sobic006G254400 Sobic006G254400 Sobic008G041300--Sobic006G254400 Sobic001G117701 Sobic001G117701 Sobic008G041300--Sobic001G117701 Sobic001G075201 Sobic001G075201 Sobic008G041300--Sobic001G075201 Sobic010G038000 Sobic010G038000 Sobic008G041300--Sobic010G038000 Sobic009G002100 Sobic009G002100 Sobic008G041300--Sobic009G002100 Sobic002G016000--Sobic005G201200 Sobic006G038700 Sobic006G038700 Sobic002G016000--Sobic006G038700 Sobic002G016000--Sobic008G041300 Sobic002G016000--Sobic010G255400 Sobic002G016000--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic002G016000--Sobic002G361500 Sobic002G016000--Sobic001G117701 Sobic004G064800 Sobic004G064800 Sobic002G016000--Sobic004G064800 Sobic009G006700 Sobic009G006700 Sobic002G016000--Sobic009G006700 Sobic005G201200--Sobic002G016000 Sobic005G201200--Sobic008G007800 Sobic005G201200--Sobic006G038700 Sobic005G201200--Sobic004G064800 Sobic005G201200--Sobic009G006700 Sobic005G201200--Sobic010G255400 Sobic002G066700 Sobic002G066700 Sobic005G201200--Sobic002G066700 Sobic002G304500 Sobic002G304500 Sobic005G201200--Sobic002G304500 Sobic002G147400 Sobic002G147400 Sobic005G201200--Sobic002G147400 Sobic010G255400--Sobic008G007800 Sobic010G255400--Sobic004G064800 Sobic010G255400--Sobic005G201200 Sobic010G255400--Sobic002G016000 Sobic010G255400--Sobic008G041300 Sobic010G255400--Sobic002G304500 Sobic001G076600 Sobic001G076600 Sobic010G255400--Sobic001G076600 Sobic002G158300 Sobic002G158300 Sobic010G255400--Sobic002G158300 Sobic006G199500 Sobic006G199500 Sobic010G255400--Sobic006G199500 Sobic008G007800--Sobic004G064800 Sobic008G007800--Sobic005G201200 Sobic009G048700 Sobic009G048700 Sobic008G007800--Sobic009G048700 Sobic008G007800--Sobic006G199500 Sobic008G007800--Sobic009G006700 Sobic009G145000 Sobic009G145000 Sobic008G007800--Sobic009G145000 Sobic008G007800--Sobic010G255400 Sobic002G243400 Sobic002G243400 Sobic008G007800--Sobic002G243400 Sobic009G008000 Sobic009G008000 Sobic008G007800--Sobic009G008000 Sobic004G020200 Sobic004G020200 Sobic006G254400--Sobic004G020200 Sobic010G198400 Sobic010G198400 Sobic006G254400--Sobic010G198400 Sobic002G424200 Sobic002G424200 Sobic006G254400--Sobic002G424200 Sobic001G417700 Sobic001G417700 Sobic006G254400--Sobic001G417700 Sobic006G254400--Sobic010G038000 Sobic002G418300 Sobic002G418300 Sobic006G254400--Sobic002G418300 Sobic006G254400--Sobic009G048700 Sobic005G144500 Sobic005G144500 Sobic006G254400--Sobic005G144500 Sobic003G211800 Sobic003G211800 Sobic006G254400--Sobic003G211800 Sobic001G117701--Sobic006G038700 Sobic001G117701--Sobic009G006700 Sobic004G116050 Sobic004G116050 Sobic001G117701--Sobic004G116050 Sobic001G117701--Sobic005G144500 Sobic001G117701--Sobic006G254400 Sobic001G117701--Sobic010G038000 Sobic001G117701--Sobic010G198400 Sobic001G117701--Sobic002G424200 Sobic001G117701--Sobic002G016000 Sobic009G119100 Sobic009G119100 Sobic001G075201--Sobic009G119100 Sobic001G392700 Sobic001G392700 Sobic001G075201--Sobic001G392700 Sobic009G056900 Sobic009G056900 Sobic001G075201--Sobic009G056900 Sobic001G075201--Sobic002G147400 Sobic001G075200 Sobic001G075200 Sobic001G075201--Sobic001G075200 Sobic001G075201--Sobic005G201200 Sobic008G154600 Sobic008G154600 Sobic001G075201--Sobic008G154600 Sobic002G014032 Sobic002G014032 Sobic001G075201--Sobic002G014032 Sobic001G075201--Sobic006G038700 Sobic010G038000--Sobic009G006700 Sobic010G038000--Sobic009G048700 Sobic007G219601 Sobic007G219601 Sobic010G038000--Sobic007G219601 Sobic010G038000--Sobic010G198400 Sobic010G038000--Sobic001G417700 Sobic010G038000--Sobic004G020200 Sobic007G094700 Sobic007G094700 Sobic010G038000--Sobic007G094700 Sobic010G038000--Sobic002G243400 Sobic008G155700 Sobic008G155700 Sobic010G038000--Sobic008G155700 Sobic009G002100--Sobic009G145000 Sobic009G002100--Sobic002G243400 Sobic009G002100--Sobic001G417700 Sobic009G002100--Sobic002G418300 Sobic001G240600 Sobic001G240600 Sobic009G002100--Sobic001G240600 Sobic009G002100--Sobic008G155700 Sobic002G189500 Sobic002G189500 Sobic009G002100--Sobic002G189500 Sobic004G080800 Sobic004G080800 Sobic009G002100--Sobic004G080800 Sobic001G220500 Sobic001G220500 Sobic009G002100--Sobic001G220500
Octagon: transcription factors


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