Gene annotation
Transcriptome id Sobic.002G158300.1
Synonym Sb02g020030
Functional annotation ankyrin, putative, expressed
UniProt C5X8C2
Pfam PF13414 PF12796
Panther DB PTHR22904 PTHR22904:SF326
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04710 : ankyrin repeat family protein
RAP-DB (Rice) LOC_Os02g29160.1 : ankyrin, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT78243 , PNT78242 , PNT78241 , PNT78245 , PNT78244 , PNT78318
Barley -
Wheat TraesCS3D02G127800 , TraesCS3D02G127800
Populus -


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cDNA sequences
Sobic.002G158300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
2 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
3 Sobic.002G015700 OsFBD13 - F-box and FBD domain containing protein, expressed -
4 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
5 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
6 Sobic.005G201200 - -
7 Sobic.003G211800 expressed protein -
8 Sobic.004G064800 haemolysin-III, putative, expressed K07297: adiponectin receptor
9 Sobic.006G013600 OsFBX209 - F-box domain containing protein, expressed -
10 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.006G254400 expressed protein -
12 Sobic.008G155400 ankyrin, putative, expressed -
13 Sobic.007G216800 expressed protein -
14 Sobic.006G199500 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
15 Sobic.008G007800 - -
16 Sobic.003G342500 methyltransferase, putative, expressed -
17 Sobic.009G048700 expressed protein -
18 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
19 Sobic.001G305900 GTP binding protein, putative, expressed -
20 Sobic.002G361500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Indole-acetic acid (IAA)-amido synthetase(PubMedID : 30367619)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family


Gene co-expression network
sample Sobic002G158300 Sobic002G158300 Sobic002G016000 Sobic002G016000 Sobic002G158300--Sobic002G016000 Sobic010G255400 Sobic010G255400 Sobic002G158300--Sobic010G255400 Sobic002G015700 Sobic002G015700 Sobic002G158300--Sobic002G015700 Sobic002G304500 Sobic002G304500 Sobic002G158300--Sobic002G304500 Sobic008G041300 Sobic008G041300 Sobic002G158300--Sobic008G041300 Sobic005G201200 Sobic005G201200 Sobic002G158300--Sobic005G201200 Sobic003G211800 Sobic003G211800 Sobic002G158300--Sobic003G211800 Sobic004G064800 Sobic004G064800 Sobic002G158300--Sobic004G064800 Sobic006G013600 Sobic006G013600 Sobic002G158300--Sobic006G013600 Sobic002G016000--Sobic005G201200 Sobic006G038700 Sobic006G038700 Sobic002G016000--Sobic006G038700 Sobic002G016000--Sobic008G041300 Sobic002G016000--Sobic010G255400 Sobic008G007800 Sobic008G007800 Sobic002G016000--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic002G016000--Sobic002G361500 Sobic001G117701 Sobic001G117701 Sobic002G016000--Sobic001G117701 Sobic002G016000--Sobic004G064800 Sobic009G006700 Sobic009G006700 Sobic002G016000--Sobic009G006700 Sobic010G255400--Sobic008G007800 Sobic010G255400--Sobic004G064800 Sobic010G255400--Sobic005G201200 Sobic010G255400--Sobic002G016000 Sobic010G255400--Sobic008G041300 Sobic010G255400--Sobic002G304500 Sobic001G076600 Sobic001G076600 Sobic010G255400--Sobic001G076600 Sobic010G255400--Sobic002G158300 Sobic006G199500 Sobic006G199500 Sobic010G255400--Sobic006G199500 Sobic002G243400 Sobic002G243400 Sobic002G015700--Sobic002G243400 Sobic002G015700--Sobic003G211800 Sobic002G097200 Sobic002G097200 Sobic002G015700--Sobic002G097200 Sobic004G168900 Sobic004G168900 Sobic002G015700--Sobic004G168900 Sobic009G048700 Sobic009G048700 Sobic002G015700--Sobic009G048700 Sobic002G015700--Sobic006G199500 Sobic001G504800 Sobic001G504800 Sobic002G015700--Sobic001G504800 Sobic002G015700--Sobic004G064800 Sobic009G145000 Sobic009G145000 Sobic002G015700--Sobic009G145000 Sobic002G304500--Sobic004G064800 Sobic002G304500--Sobic005G201200 Sobic002G304500--Sobic008G007800 Sobic002G304500--Sobic010G255400 Sobic002G304500--Sobic002G016000 Sobic002G304500--Sobic006G199500 Sobic004G328100 Sobic004G328100 Sobic002G304500--Sobic004G328100 Sobic008G007700 Sobic008G007700 Sobic002G304500--Sobic008G007700 Sobic004G038400 Sobic004G038400 Sobic002G304500--Sobic004G038400 Sobic008G041300--Sobic002G016000 Sobic008G041300--Sobic005G201200 Sobic008G041300--Sobic010G255400 Sobic008G041300--Sobic008G007800 Sobic006G254400 Sobic006G254400 Sobic008G041300--Sobic006G254400 Sobic008G041300--Sobic001G117701 Sobic001G075201 Sobic001G075201 Sobic008G041300--Sobic001G075201 Sobic010G038000 Sobic010G038000 Sobic008G041300--Sobic010G038000 Sobic009G002100 Sobic009G002100 Sobic008G041300--Sobic009G002100 Sobic005G201200--Sobic002G016000 Sobic005G201200--Sobic008G007800 Sobic005G201200--Sobic006G038700 Sobic005G201200--Sobic004G064800 Sobic005G201200--Sobic009G006700 Sobic005G201200--Sobic010G255400 Sobic002G066700 Sobic002G066700 Sobic005G201200--Sobic002G066700 Sobic005G201200--Sobic002G304500 Sobic002G147400 Sobic002G147400 Sobic005G201200--Sobic002G147400 Sobic002G418300 Sobic002G418300 Sobic003G211800--Sobic002G418300 Sobic001G417700 Sobic001G417700 Sobic003G211800--Sobic001G417700 Sobic003G211800--Sobic009G048700 Sobic003G211800--Sobic009G145000 Sobic009G008000 Sobic009G008000 Sobic003G211800--Sobic009G008000 Sobic003G211800--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic003G211800--Sobic008G056600 Sobic001G136000 Sobic001G136000 Sobic003G211800--Sobic001G136000 Sobic002G099700 Sobic002G099700 Sobic003G211800--Sobic002G099700 Sobic004G064800--Sobic008G007800 Sobic004G064800--Sobic002G304500 Sobic004G064800--Sobic005G201200 Sobic004G064800--Sobic010G255400 Sobic004G064800--Sobic006G199500 Sobic004G064800--Sobic009G048700 Sobic004G064800--Sobic008G007700 Sobic004G064800--Sobic002G016000 Sobic004G064800--Sobic009G006700 Sobic006G013600--Sobic002G418300 Sobic008G155700 Sobic008G155700 Sobic006G013600--Sobic008G155700 Sobic006G013600--Sobic009G048700 Sobic006G162500 Sobic006G162500 Sobic006G013600--Sobic006G162500 Sobic007G094700 Sobic007G094700 Sobic006G013600--Sobic007G094700 Sobic006G013600--Sobic001G417700 Sobic007G219601 Sobic007G219601 Sobic006G013600--Sobic007G219601 Sobic010G061600 Sobic010G061600 Sobic006G013600--Sobic010G061600 Sobic006G013600--Sobic008G056600
Octagon: transcription factors


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