Gene annotation
Transcriptome id Sobic.002G361500.1
Synonym AUR3, Gretchen Hagen3, GH3-2, Sb02g038170, YDK1, BRU6, GH3-8, GH3.2, SbGH3-3;Auxin-responsive gene
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
Indole-acetic acid (IAA)-amido synthetase (PubMedID : 30367619)
OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt C5XD60
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF4
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37390 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os07g40290.1 : OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a037889 , Zm00025a048626 , Zm00025a027437 , Zm00025a002969 , Zm00025a015082 , Zm00025a027255
Brachypodium KQK15444 , KQK10103
Barley HORVU2Hr1G034670.4 , HORVU2Hr1G034670.5 , HORVU2Hr1G034670.6 , HORVU2Hr1G034670.1 , HORVU2Hr1G034670.2 , HORVU2Hr1G034670.3 , HORVU2Hr1G088460.2 , HORVU2Hr1G088460.1 , HORVU3Hr1G077360.2 , HORVU3Hr1G077360.3 , HORVU3Hr1G077360.1
Wheat TraesCS2B02G161700 , TraesCS3A02G301200 , TraesCS2D02G140800 , TraesCS3B02G335300 , TraesCS3D02G300600 , TraesCS2D02G191800 , TraesCS2A02G137800 , TraesCS2A02G183900 , TraesCS2B02G210600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G361500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G424200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
2 Sobic.009G006700 vacuolar ATP synthase, putative, expressed K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
3 Sobic.005G144500 glycosyltransferase, putative, expressed -
4 Sobic.006G038700 - -
5 Sobic.010G198400 expressed protein -
6 Sobic.007G219601 - -
7 Sobic.009G008000 transcription factor Dp, putative, expressed -
8 Sobic.004G020200 expressed protein -
9 Sobic.006G254400 expressed protein -
10 Sobic.007G094700 - -
11 Sobic.009G048700 expressed protein -
12 Sobic.008G155700 ankyrin repeat domain-containing protein 44, putative, expressed -
13 Sobic.004G203150 - -
14 Sobic.010G038000 ATP-binding region, ATPase-like domain containing protein, expressed -
15 Sobic.006G199500 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
16 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
17 Sobic.001G117701 - -
18 Sobic.003G211800 expressed protein -
19 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -
20 Sobic.006G013600 OsFBX209 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G361500 Sobic002G361500 Sobic002G424200 Sobic002G424200 Sobic002G361500--Sobic002G424200 Sobic009G006700 Sobic009G006700 Sobic002G361500--Sobic009G006700 Sobic005G144500 Sobic005G144500 Sobic002G361500--Sobic005G144500 Sobic006G038700 Sobic006G038700 Sobic002G361500--Sobic006G038700 Sobic010G198400 Sobic010G198400 Sobic002G361500--Sobic010G198400 Sobic007G219601 Sobic007G219601 Sobic002G361500--Sobic007G219601 Sobic009G008000 Sobic009G008000 Sobic002G361500--Sobic009G008000 Sobic004G020200 Sobic004G020200 Sobic002G361500--Sobic004G020200 Sobic006G254400 Sobic006G254400 Sobic002G361500--Sobic006G254400 Sobic002G424200--Sobic010G198400 Sobic002G424200--Sobic009G008000 Sobic002G424200--Sobic007G219601 Sobic008G155700 Sobic008G155700 Sobic002G424200--Sobic008G155700 Sobic002G424200--Sobic009G006700 Sobic002G424200--Sobic004G020200 Sobic007G094700 Sobic007G094700 Sobic002G424200--Sobic007G094700 Sobic004G203150 Sobic004G203150 Sobic002G424200--Sobic004G203150 Sobic002G424200--Sobic006G254400 Sobic009G006700--Sobic007G219601 Sobic009G006700--Sobic007G094700 Sobic009G006700--Sobic004G203150 Sobic009G048700 Sobic009G048700 Sobic009G006700--Sobic009G048700 Sobic009G006700--Sobic009G008000 Sobic009G006700--Sobic005G144500 Sobic009G006700--Sobic008G155700 Sobic009G006700--Sobic006G038700 Sobic010G038000 Sobic010G038000 Sobic009G006700--Sobic010G038000 Sobic006G064450 Sobic006G064450 Sobic005G144500--Sobic006G064450 Sobic005G144500--Sobic007G219601 Sobic005G144500--Sobic007G094700 Sobic005G144500--Sobic008G155700 Sobic005G144500--Sobic009G006700 Sobic003G133600 Sobic003G133600 Sobic005G144500--Sobic003G133600 Sobic005G144500--Sobic004G203150 Sobic010G049700 Sobic010G049700 Sobic005G144500--Sobic010G049700 Sobic005G144500--Sobic010G038000 Sobic006G038700--Sobic009G006700 Sobic001G117701 Sobic001G117701 Sobic006G038700--Sobic001G117701 Sobic005G201200 Sobic005G201200 Sobic006G038700--Sobic005G201200 Sobic002G016000 Sobic002G016000 Sobic006G038700--Sobic002G016000 Sobic008G105600 Sobic008G105600 Sobic006G038700--Sobic008G105600 Sobic010G143633 Sobic010G143633 Sobic006G038700--Sobic010G143633 Sobic006G038700--Sobic002G361500 Sobic006G038700--Sobic005G144500 Sobic006G038700--Sobic010G198400 Sobic010G198400--Sobic002G424200 Sobic010G198400--Sobic010G038000 Sobic010G198400--Sobic006G254400 Sobic010G198400--Sobic009G006700 Sobic010G198400--Sobic009G048700 Sobic010G198400--Sobic004G020200 Sobic002G243400 Sobic002G243400 Sobic010G198400--Sobic002G243400 Sobic006G199500 Sobic006G199500 Sobic010G198400--Sobic006G199500 Sobic010G198400--Sobic009G008000 Sobic007G219601--Sobic007G094700 Sobic007G219601--Sobic004G203150 Sobic007G219601--Sobic003G133600 Sobic002G418300 Sobic002G418300 Sobic007G219601--Sobic002G418300 Sobic007G219601--Sobic006G064450 Sobic007G219601--Sobic008G155700 Sobic007G219601--Sobic009G008000 Sobic001G417700 Sobic001G417700 Sobic007G219601--Sobic001G417700 Sobic004G328200 Sobic004G328200 Sobic007G219601--Sobic004G328200 Sobic009G008000--Sobic009G048700 Sobic009G008000--Sobic007G094700 Sobic009G008000--Sobic004G203150 Sobic009G008000--Sobic001G417700 Sobic009G145000 Sobic009G145000 Sobic009G008000--Sobic009G145000 Sobic009G008000--Sobic007G219601 Sobic009G008000--Sobic008G155700 Sobic009G008000--Sobic002G418300 Sobic002G189500 Sobic002G189500 Sobic009G008000--Sobic002G189500 Sobic004G020200--Sobic001G417700 Sobic004G020200--Sobic009G008000 Sobic004G020200--Sobic007G094700 Sobic004G020200--Sobic009G048700 Sobic004G020200--Sobic007G219601 Sobic001G136000 Sobic001G136000 Sobic004G020200--Sobic001G136000 Sobic004G020200--Sobic008G155700 Sobic004G020200--Sobic002G418300 Sobic004G020200--Sobic009G145000 Sobic006G254400--Sobic004G020200 Sobic006G254400--Sobic010G198400 Sobic006G254400--Sobic002G424200 Sobic006G254400--Sobic001G417700 Sobic006G254400--Sobic010G038000 Sobic006G254400--Sobic002G418300 Sobic006G254400--Sobic009G048700 Sobic006G254400--Sobic005G144500 Sobic003G211800 Sobic003G211800 Sobic006G254400--Sobic003G211800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.