Gene annotation
Transcriptome id Sobic.006G041800.1
Synonym Sb06g009810
Functional annotation mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
UniProt C5YDW4
Pfam PF02466
Panther DB PTHR14110 PTHR14110:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25120 : Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
RAP-DB (Rice) LOC_Os04g30740.1 : mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
MaizeGDB (Corn) Zm00025a011880
Brachypodium KQJ82179
Barley -
Wheat TraesCS2B02G296400 , TraesCS2A02G278700 , TraesCS2D02G277900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
2 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
3 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
4 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
5 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
6 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
7 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
8 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
9 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
10 Sobic.002G259700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
11 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
12 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
13 Sobic.006G012700 expressed protein -
14 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
15 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
16 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
17 Sobic.001G387200 expressed protein -
18 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
19 Sobic.009G209900 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
20 Sobic.009G216700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2


Gene co-expression network
sample Sobic006G041800 Sobic006G041800 Sobic007G119600 Sobic007G119600 Sobic006G041800--Sobic007G119600 Sobic001G008100 Sobic001G008100 Sobic006G041800--Sobic001G008100 Sobic003G276100 Sobic003G276100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic002G276800 Sobic002G276800 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic003G388700 Sobic003G388700 Sobic006G041800--Sobic003G388700 Sobic001G387800 Sobic001G387800 Sobic006G041800--Sobic001G387800 Sobic002G255400 Sobic002G255400 Sobic006G041800--Sobic002G255400 Sobic009G224400 Sobic009G224400 Sobic007G119600--Sobic009G224400 Sobic009G191400 Sobic009G191400 Sobic007G119600--Sobic009G191400 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic001G073600 Sobic001G073600 Sobic007G119600--Sobic001G073600 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G008100--Sobic001G387800 Sobic001G008100--Sobic003G276100 Sobic002G079700 Sobic002G079700 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic001G008100--Sobic002G276800 Sobic003G276100--Sobic007G012900 Sobic003G276100--Sobic006G041800 Sobic003G276100--Sobic001G008100 Sobic003G276100--Sobic007G119600 Sobic001G443200 Sobic001G443200 Sobic003G276100--Sobic001G443200 Sobic003G276100--Sobic009G191400 Sobic001G387200 Sobic001G387200 Sobic003G276100--Sobic001G387200 Sobic001G178500 Sobic001G178500 Sobic003G276100--Sobic001G178500 Sobic007G117800 Sobic007G117800 Sobic003G276100--Sobic007G117800 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic003G085500 Sobic003G085500 Sobic001G485300--Sobic003G085500 Sobic001G485300--Sobic002G276800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G352800 Sobic001G352800 Sobic001G485300--Sobic001G352800 Sobic002G276800--Sobic001G485300 Sobic002G276800--Sobic001G008100 Sobic007G148400 Sobic007G148400 Sobic002G276800--Sobic007G148400 Sobic002G276800--Sobic006G041800 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic001G061200 Sobic001G061200 Sobic002G276800--Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic002G276800--Sobic001G193100 Sobic002G401700 Sobic002G401700 Sobic002G276800--Sobic002G401700 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic007G012900--Sobic003G276100 Sobic007G012900--Sobic002G401700 Sobic007G012900--Sobic001G008100 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic007G012900--Sobic009G191400 Sobic007G012900--Sobic002G079700 Sobic003G388700--Sobic007G119600 Sobic003G388700--Sobic001G073600 Sobic003G388700--Sobic003G135600 Sobic003G388700--Sobic009G191400 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic003G388700--Sobic006G041800 Sobic003G196200 Sobic003G196200 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G387800--Sobic001G008100 Sobic001G387800--Sobic004G039400 Sobic001G387800--Sobic007G119600 Sobic001G387800--Sobic009G191400 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G387800--Sobic001G465400 Sobic002G255400--Sobic003G260600 Sobic003G089100 Sobic003G089100 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G420600 Sobic002G420600 Sobic002G255400--Sobic002G420600 Sobic003G201500 Sobic003G201500 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G352200 Sobic002G352200 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200
Octagon: transcription factors


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