Gene annotation
Transcriptome id Sobic.009G216700.1,Sobic.009G216700.3,Sobic.009G216700.2
Synonym Sb09g027180
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6PA12 , A0A1B6P9W6 , C5YUW9
Pfam PF00400
Panther DB PTHR19861
NCBI CDD KOG1446; Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2
KEGG Orthology K14962; WDR82, SWD2, COMPASS component SWD2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14530 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os05g46570.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044426 , Zm00025a036486
Brachypodium KQK05102
Barley HORVU1Hr1G079080.9 , HORVU1Hr1G079080.12 , HORVU1Hr1G079080.11 , HORVU1Hr1G079080.10 , HORVU1Hr1G079080.7 , HORVU1Hr1G079080.4 , HORVU1Hr1G079080.8 , HORVU1Hr1G079080.3 , HORVU1Hr1G079080.2 , HORVU1Hr1G079080.1 , HORVU1Hr1G079080.6 , HORVU1Hr1G079080.5
Wheat TraesCS1D02G371100 , TraesCS1A02G365700 , TraesCS1B02G383300
Populus -


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cDNA sequences
Sobic.009G216700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
2 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
3 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
4 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
5 Sobic.003G395300 TBC domain containing protein, expressed -
6 Sobic.006G095200 signal peptidase complex subunit 2, putative, expressed K12947: SPCS2, signal peptidase complex subunit 2
7 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
8 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
9 Sobic.007G206300 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
10 Sobic.010G197900 expressed protein -
11 Sobic.004G054700 expressed protein K10745: ribonuclease H2 subunit C
12 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
13 Sobic.001G207500 ZOS10-06 - C2H2 zinc finger protein, expressed K15685: E3 ubiquitin-protein ligase Hakai
14 Sobic.006G158332 - -
15 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
16 Sobic.003G261800 expressed protein -
17 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
18 Sobic.006G160100 EF hand family protein, expressed -
19 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
20 Sobic.006G276700 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase


Gene co-expression network
sample Sobic009G216700 Sobic009G216700 Sobic006G041800 Sobic006G041800 Sobic009G216700--Sobic006G041800 Sobic003G388700 Sobic003G388700 Sobic009G216700--Sobic003G388700 Sobic007G012900 Sobic007G012900 Sobic009G216700--Sobic007G012900 Sobic001G008100 Sobic001G008100 Sobic009G216700--Sobic001G008100 Sobic003G395300 Sobic003G395300 Sobic009G216700--Sobic003G395300 Sobic006G095200 Sobic006G095200 Sobic009G216700--Sobic006G095200 Sobic010G002800 Sobic010G002800 Sobic009G216700--Sobic010G002800 Sobic009G191400 Sobic009G191400 Sobic009G216700--Sobic009G191400 Sobic007G206300 Sobic007G206300 Sobic009G216700--Sobic007G206300 Sobic007G119600 Sobic007G119600 Sobic006G041800--Sobic007G119600 Sobic006G041800--Sobic001G008100 Sobic003G276100 Sobic003G276100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic002G276800 Sobic002G276800 Sobic006G041800--Sobic002G276800 Sobic006G041800--Sobic007G012900 Sobic006G041800--Sobic003G388700 Sobic001G387800 Sobic001G387800 Sobic006G041800--Sobic001G387800 Sobic002G255400 Sobic002G255400 Sobic006G041800--Sobic002G255400 Sobic003G388700--Sobic007G119600 Sobic001G073600 Sobic001G073600 Sobic003G388700--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic003G388700--Sobic003G135600 Sobic003G388700--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic003G388700--Sobic006G041800 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic007G012900--Sobic003G276100 Sobic002G401700 Sobic002G401700 Sobic007G012900--Sobic002G401700 Sobic007G012900--Sobic001G008100 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic007G012900--Sobic003G135600 Sobic007G012900--Sobic009G191400 Sobic007G012900--Sobic002G079700 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G008100--Sobic001G387800 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic001G008100--Sobic002G276800 Sobic001G207500 Sobic001G207500 Sobic003G395300--Sobic001G207500 Sobic001G467100 Sobic001G467100 Sobic003G395300--Sobic001G467100 Sobic006G039400 Sobic006G039400 Sobic003G395300--Sobic006G039400 Sobic001G358500 Sobic001G358500 Sobic003G395300--Sobic001G358500 Sobic008G129600 Sobic008G129600 Sobic003G395300--Sobic008G129600 Sobic002G160700 Sobic002G160700 Sobic003G395300--Sobic002G160700 Sobic002G131400 Sobic002G131400 Sobic003G395300--Sobic002G131400 Sobic010G179700 Sobic010G179700 Sobic003G395300--Sobic010G179700 Sobic003G182300 Sobic003G182300 Sobic003G395300--Sobic003G182300 Sobic009G120100 Sobic009G120100 Sobic006G095200--Sobic009G120100 Sobic006G095200--Sobic007G012900 Sobic010G266300 Sobic010G266300 Sobic006G095200--Sobic010G266300 Sobic007G117800 Sobic007G117800 Sobic006G095200--Sobic007G117800 Sobic010G008800 Sobic010G008800 Sobic006G095200--Sobic010G008800 Sobic006G095200--Sobic003G148900 Sobic007G152400 Sobic007G152400 Sobic006G095200--Sobic007G152400 Sobic008G162000 Sobic008G162000 Sobic006G095200--Sobic008G162000 Sobic009G070200 Sobic009G070200 Sobic006G095200--Sobic009G070200 Sobic001G352800 Sobic001G352800 Sobic010G002800--Sobic001G352800 Sobic003G085500 Sobic003G085500 Sobic010G002800--Sobic003G085500 Sobic010G002800--Sobic003G388700 Sobic002G232400 Sobic002G232400 Sobic010G002800--Sobic002G232400 Sobic001G309200 Sobic001G309200 Sobic010G002800--Sobic001G309200 Sobic004G186100 Sobic004G186100 Sobic010G002800--Sobic004G186100 Sobic002G222200 Sobic002G222200 Sobic010G002800--Sobic002G222200 Sobic010G002800--Sobic001G073600 Sobic004G007700 Sobic004G007700 Sobic010G002800--Sobic004G007700 Sobic009G191400--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic009G191400--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic009G191400--Sobic002G262200 Sobic001G458800 Sobic001G458800 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic007G206300--Sobic001G008100 Sobic007G206300--Sobic001G387800 Sobic007G206300--Sobic007G119600 Sobic001G112400 Sobic001G112400 Sobic007G206300--Sobic001G112400 Sobic007G206300--Sobic004G039400 Sobic001G304000 Sobic001G304000 Sobic007G206300--Sobic001G304000 Sobic001G178500 Sobic001G178500 Sobic007G206300--Sobic001G178500 Sobic007G206300--Sobic006G041800 Sobic007G206300--Sobic009G224400
Octagon: transcription factors


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