Gene annotation
Transcriptome id Sobic.010G197900.2
Synonym RDM1
Functional annotation expressed protein
UniProt A0A1W0VTZ3
Pfam PF09187
Panther DB PTHR36366 PTHR36366:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT3G22680 : RNA-DIRECTED DNA METHYLATION 1
RAP-DB (Rice) LOC_Os06g42430.2 : expressed protein
MaizeGDB (Corn) Zm00025a042104
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G197900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
2 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
3 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
4 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
5 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
6 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
7 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
8 Sobic.009G001900 expressed protein -
9 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
10 Sobic.001G013200 actin-related protein 2/3 complex subunit 4, putative, expressed K05755: actin related protein 2/3 complex, subunit 4
11 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
12 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
13 Sobic.003G074900 expressed protein -
14 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
15 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
16 Sobic.002G427700 expressed protein -
17 Sobic.006G160100 EF hand family protein, expressed -
18 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
19 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
20 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase


Gene co-expression network
sample Sobic010G197900 Sobic010G197900 Sobic003G131300 Sobic003G131300 Sobic010G197900--Sobic003G131300 Sobic001G367000 Sobic001G367000 Sobic010G197900--Sobic001G367000 Sobic002G401700 Sobic002G401700 Sobic010G197900--Sobic002G401700 Sobic006G094600 Sobic006G094600 Sobic010G197900--Sobic006G094600 Sobic008G136800 Sobic008G136800 Sobic010G197900--Sobic008G136800 Sobic003G374000 Sobic003G374000 Sobic010G197900--Sobic003G374000 Sobic004G344800 Sobic004G344800 Sobic010G197900--Sobic004G344800 Sobic009G001900 Sobic009G001900 Sobic010G197900--Sobic009G001900 Sobic004G164000 Sobic004G164000 Sobic010G197900--Sobic004G164000 Sobic003G131300--Sobic004G164000 Sobic003G131300--Sobic010G197900 Sobic003G131300--Sobic006G094600 Sobic001G126200 Sobic001G126200 Sobic003G131300--Sobic001G126200 Sobic001G035400 Sobic001G035400 Sobic003G131300--Sobic001G035400 Sobic003G131300--Sobic004G344800 Sobic001G036700 Sobic001G036700 Sobic003G131300--Sobic001G036700 Sobic003G131300--Sobic009G001900 Sobic007G019501 Sobic007G019501 Sobic003G131300--Sobic007G019501 Sobic001G529000 Sobic001G529000 Sobic001G367000--Sobic001G529000 Sobic004G224800 Sobic004G224800 Sobic001G367000--Sobic004G224800 Sobic006G222400 Sobic006G222400 Sobic001G367000--Sobic006G222400 Sobic002G090700 Sobic002G090700 Sobic001G367000--Sobic002G090700 Sobic003G362400 Sobic003G362400 Sobic001G367000--Sobic003G362400 Sobic001G054200 Sobic001G054200 Sobic001G367000--Sobic001G054200 Sobic001G367000--Sobic001G126200 Sobic003G124800 Sobic003G124800 Sobic001G367000--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G367000--Sobic010G065400 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic007G012900 Sobic007G012900 Sobic002G401700--Sobic007G012900 Sobic004G159000 Sobic004G159000 Sobic002G401700--Sobic004G159000 Sobic007G117800 Sobic007G117800 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic001G378200 Sobic001G378200 Sobic002G401700--Sobic001G378200 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic006G203900 Sobic006G203900 Sobic008G136800--Sobic006G203900 Sobic008G136800--Sobic009G001900 Sobic009G211900 Sobic009G211900 Sobic008G136800--Sobic009G211900 Sobic007G013900 Sobic007G013900 Sobic008G136800--Sobic007G013900 Sobic001G031800 Sobic001G031800 Sobic008G136800--Sobic001G031800 Sobic006G124300 Sobic006G124300 Sobic008G136800--Sobic006G124300 Sobic007G141100 Sobic007G141100 Sobic008G136800--Sobic007G141100 Sobic002G296200 Sobic002G296200 Sobic008G136800--Sobic002G296200 Sobic003G074900 Sobic003G074900 Sobic008G136800--Sobic003G074900 Sobic007G118000 Sobic007G118000 Sobic003G374000--Sobic007G118000 Sobic009G192000 Sobic009G192000 Sobic003G374000--Sobic009G192000 Sobic003G374000--Sobic010G205300 Sobic002G268400 Sobic002G268400 Sobic003G374000--Sobic002G268400 Sobic001G341500 Sobic001G341500 Sobic003G374000--Sobic001G341500 Sobic007G167900 Sobic007G167900 Sobic003G374000--Sobic007G167900 Sobic003G338500 Sobic003G338500 Sobic003G374000--Sobic003G338500 Sobic001G428800 Sobic001G428800 Sobic003G374000--Sobic001G428800 Sobic003G374000--Sobic008G137600 Sobic001G073600 Sobic001G073600 Sobic004G344800--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic004G344800--Sobic003G135600 Sobic004G344800--Sobic004G159000 Sobic004G344800--Sobic001G035400 Sobic009G191400 Sobic009G191400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic002G262200 Sobic002G262200 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic009G001900--Sobic002G296200 Sobic009G001900--Sobic008G136800 Sobic004G066800 Sobic004G066800 Sobic009G001900--Sobic004G066800 Sobic009G001900--Sobic006G203900 Sobic003G322300 Sobic003G322300 Sobic009G001900--Sobic003G322300 Sobic009G001900--Sobic004G164000 Sobic006G231500 Sobic006G231500 Sobic009G001900--Sobic006G231500 Sobic004G260200 Sobic004G260200 Sobic009G001900--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic009G001900--Sobic002G309700 Sobic004G164000--Sobic003G131300 Sobic004G164000--Sobic007G019501 Sobic004G164000--Sobic009G001900 Sobic004G164000--Sobic004G159000 Sobic004G164000--Sobic002G090700 Sobic001G392800 Sobic001G392800 Sobic004G164000--Sobic001G392800 Sobic001G309500 Sobic001G309500 Sobic004G164000--Sobic001G309500 Sobic004G164000--Sobic008G136800 Sobic008G025700 Sobic008G025700 Sobic004G164000--Sobic008G025700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.