Gene annotation
Transcriptome id Sobic.006G160100.1
Synonym Sb06g023700
Functional annotation EF hand family protein, expressed
UniProt C5YCX8
Pfam PF13499
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G73440 : calmodulin-related
RAP-DB (Rice) LOC_Os04g45180.1 : EF hand family protein, expressed
MaizeGDB (Corn) Zm00025a056590
Brachypodium KQJ83782
Barley -
Wheat TraesCS2A02G368600
Populus -


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cDNA sequences
Sobic.006G160100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G087900 expressed protein -
2 Sobic.010G197900 expressed protein -
3 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
4 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
5 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
6 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
7 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
8 Sobic.009G216700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
9 Sobic.004G291400 rho guanine nucleotide exchange factor, putative, expressed -
10 Sobic.009G139300 expressed protein -
11 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
12 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
13 Sobic.010G114700 heat shock factor-binding protein 1, putative, expressed -
14 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
15 Sobic.010G205300 secreted salivary protein, putative, expressed -
16 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
17 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
18 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
19 Sobic.001G464400 expressed protein -
20 Sobic.009G222900 ribosomal protein, putative, expressed K02948: RP-S11, MRPS11, small subunit ribosomal protein S11


Gene co-expression network
sample Sobic006G160100 Sobic006G160100 Sobic008G087900 Sobic008G087900 Sobic006G160100--Sobic008G087900 Sobic010G197900 Sobic010G197900 Sobic006G160100--Sobic010G197900 Sobic001G404200 Sobic001G404200 Sobic006G160100--Sobic001G404200 Sobic006G094600 Sobic006G094600 Sobic006G160100--Sobic006G094600 Sobic006G011000 Sobic006G011000 Sobic006G160100--Sobic006G011000 Sobic003G196800 Sobic003G196800 Sobic006G160100--Sobic003G196800 Sobic005G111900 Sobic005G111900 Sobic006G160100--Sobic005G111900 Sobic009G216700 Sobic009G216700 Sobic006G160100--Sobic009G216700 Sobic004G291400 Sobic004G291400 Sobic006G160100--Sobic004G291400 Sobic008G087900--Sobic006G160100 Sobic001G434200 Sobic001G434200 Sobic008G087900--Sobic001G434200 Sobic008G087900--Sobic005G111900 Sobic007G028500 Sobic007G028500 Sobic008G087900--Sobic007G028500 Sobic002G181600 Sobic002G181600 Sobic008G087900--Sobic002G181600 Sobic002G047500 Sobic002G047500 Sobic008G087900--Sobic002G047500 Sobic006G274800 Sobic006G274800 Sobic008G087900--Sobic006G274800 Sobic006G039400 Sobic006G039400 Sobic008G087900--Sobic006G039400 Sobic001G412100 Sobic001G412100 Sobic008G087900--Sobic001G412100 Sobic003G131300 Sobic003G131300 Sobic010G197900--Sobic003G131300 Sobic001G367000 Sobic001G367000 Sobic010G197900--Sobic001G367000 Sobic002G401700 Sobic002G401700 Sobic010G197900--Sobic002G401700 Sobic010G197900--Sobic006G094600 Sobic008G136800 Sobic008G136800 Sobic010G197900--Sobic008G136800 Sobic003G374000 Sobic003G374000 Sobic010G197900--Sobic003G374000 Sobic004G344800 Sobic004G344800 Sobic010G197900--Sobic004G344800 Sobic009G001900 Sobic009G001900 Sobic010G197900--Sobic009G001900 Sobic004G164000 Sobic004G164000 Sobic010G197900--Sobic004G164000 Sobic001G404200--Sobic006G094600 Sobic001G332300 Sobic001G332300 Sobic001G404200--Sobic001G332300 Sobic007G118000 Sobic007G118000 Sobic001G404200--Sobic007G118000 Sobic001G404200--Sobic003G374000 Sobic005G184200 Sobic005G184200 Sobic001G404200--Sobic005G184200 Sobic008G110500 Sobic008G110500 Sobic001G404200--Sobic008G110500 Sobic007G014900 Sobic007G014900 Sobic001G404200--Sobic007G014900 Sobic003G148900 Sobic003G148900 Sobic001G404200--Sobic003G148900 Sobic008G145100 Sobic008G145100 Sobic001G404200--Sobic008G145100 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G094600--Sobic006G011000 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic006G011000--Sobic002G204000 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic005G027300 Sobic005G027300 Sobic003G196800--Sobic005G027300 Sobic009G212300 Sobic009G212300 Sobic003G196800--Sobic009G212300 Sobic001G096100 Sobic001G096100 Sobic003G196800--Sobic001G096100 Sobic002G341800 Sobic002G341800 Sobic003G196800--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic009G234400 Sobic009G234400 Sobic003G196800--Sobic009G234400 Sobic006G002201 Sobic006G002201 Sobic003G196800--Sobic006G002201 Sobic007G061400 Sobic007G061400 Sobic003G196800--Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic009G149500 Sobic009G149500 Sobic005G111900--Sobic009G149500 Sobic006G041800 Sobic006G041800 Sobic009G216700--Sobic006G041800 Sobic003G388700 Sobic003G388700 Sobic009G216700--Sobic003G388700 Sobic007G012900 Sobic007G012900 Sobic009G216700--Sobic007G012900 Sobic001G008100 Sobic001G008100 Sobic009G216700--Sobic001G008100 Sobic003G395300 Sobic003G395300 Sobic009G216700--Sobic003G395300 Sobic006G095200 Sobic006G095200 Sobic009G216700--Sobic006G095200 Sobic010G002800 Sobic010G002800 Sobic009G216700--Sobic010G002800 Sobic009G191400 Sobic009G191400 Sobic009G216700--Sobic009G191400 Sobic007G206300 Sobic007G206300 Sobic009G216700--Sobic007G206300 Sobic005G105500 Sobic005G105500 Sobic004G291400--Sobic005G105500 Sobic006G216000 Sobic006G216000 Sobic004G291400--Sobic006G216000 Sobic004G291400--Sobic006G002201 Sobic006G020900 Sobic006G020900 Sobic004G291400--Sobic006G020900 Sobic004G291400--Sobic003G196800 Sobic004G124100 Sobic004G124100 Sobic004G291400--Sobic004G124100 Sobic004G291400--Sobic002G341800 Sobic004G291400--Sobic005G111900 Sobic004G291400--Sobic009G234400
Octagon: transcription factors


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