Gene annotation
Transcriptome id Sobic.006G011000.1
Synonym serine/arginine-rich (SR) family, Sb06g001100, RSP31, sb-RS28, ATRSP31
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, putative, expressed
UniProt M1H986 , C5YBS1
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
KEGG Orthology K12893; splicing factor, arginine/serine-rich 4/5/6
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G61860 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g02870.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a012250 , Zm00025a055682
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G011000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
2 Sobic.001G329300 expressed protein -
3 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
4 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
5 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
6 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
7 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
8 Sobic.010G163100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
9 Sobic.003G402600 ubiquitin family domain containing protein, expressed K12160: SUMO, small ubiquitin-related modifier
10 Sobic.004G226800 expressed protein -
11 Sobic.006G183000 RING zinc finger protein, putative, expressed -
12 Sobic.010G205300 secreted salivary protein, putative, expressed -
13 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
14 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
15 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
16 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
17 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
18 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
19 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
20 Sobic.006G160100 EF hand family protein, expressed -


Gene co-expression network
sample Sobic006G011000 Sobic006G011000 Sobic006G094600 Sobic006G094600 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic006G011000--Sobic002G204000 Sobic008G137600 Sobic008G137600 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic006G094600--Sobic008G137600 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic001G329300--Sobic002G204000 Sobic001G329300--Sobic006G011000 Sobic007G226100 Sobic007G226100 Sobic001G329300--Sobic007G226100 Sobic006G252100 Sobic006G252100 Sobic001G329300--Sobic006G252100 Sobic004G226800 Sobic004G226800 Sobic001G329300--Sobic004G226800 Sobic001G329300--Sobic006G094600 Sobic004G316900 Sobic004G316900 Sobic001G329300--Sobic004G316900 Sobic001G350501 Sobic001G350501 Sobic001G329300--Sobic001G350501 Sobic010G193800 Sobic010G193800 Sobic001G329300--Sobic010G193800 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic002G204000--Sobic001G329300 Sobic002G204000--Sobic010G193800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic003G424800 Sobic003G424800 Sobic001G147100--Sobic003G424800 Sobic001G147100--Sobic001G404100 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic002G406600 Sobic002G406600 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic009G104000 Sobic009G104000 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800 Sobic006G109700--Sobic008G137600 Sobic001G444300 Sobic001G444300 Sobic006G109700--Sobic001G444300 Sobic006G109700--Sobic006G183000 Sobic006G109700--Sobic001G294900 Sobic009G168000 Sobic009G168000 Sobic006G109700--Sobic009G168000 Sobic006G211800 Sobic006G211800 Sobic006G109700--Sobic006G211800 Sobic006G231500 Sobic006G231500 Sobic006G109700--Sobic006G231500 Sobic004G348900 Sobic004G348900 Sobic006G109700--Sobic004G348900 Sobic006G109700--Sobic001G502200 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic001G532100--Sobic010G193800 Sobic001G532100--Sobic001G285300 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic001G532100--Sobic003G273400 Sobic010G163100--Sobic006G011000 Sobic010G163100--Sobic002G204000 Sobic001G487100 Sobic001G487100 Sobic010G163100--Sobic001G487100 Sobic003G122000 Sobic003G122000 Sobic010G163100--Sobic003G122000 Sobic003G121300 Sobic003G121300 Sobic010G163100--Sobic003G121300 Sobic010G220900 Sobic010G220900 Sobic010G163100--Sobic010G220900 Sobic001G249700 Sobic001G249700 Sobic010G163100--Sobic001G249700 Sobic004G156800 Sobic004G156800 Sobic010G163100--Sobic004G156800 Sobic009G258400 Sobic009G258400 Sobic010G163100--Sobic009G258400 Sobic003G402600--Sobic006G011000 Sobic010G178800 Sobic010G178800 Sobic003G402600--Sobic010G178800 Sobic003G369500 Sobic003G369500 Sobic003G402600--Sobic003G369500 Sobic010G267500 Sobic010G267500 Sobic003G402600--Sobic010G267500 Sobic009G015700 Sobic009G015700 Sobic003G402600--Sobic009G015700 Sobic003G402600--Sobic006G211800 Sobic004G012800 Sobic004G012800 Sobic003G402600--Sobic004G012800 Sobic001G250300 Sobic001G250300 Sobic003G402600--Sobic001G250300 Sobic003G402600--Sobic002G428200
Octagon: transcription factors


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