Gene annotation
Transcriptome id Sobic.004G019600.1
Synonym Sb04g001820, ATSAP18, SAP18
Functional annotation histone deacetylase complex subunit SAP18, putative, expressed
UniProt C5XT16
Pfam PF06487
Panther DB PTHR13082
NCBI CDD KOG3391; Transcriptional co-repressor component
KEGG Orthology K14324; histone deacetylase complex subunit SAP18
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45640 : SIN3 associated polypeptide P18
RAP-DB (Rice) LOC_Os02g02960.2 : histone deacetylase complex subunit SAP18, putative, expressed
MaizeGDB (Corn) Zm00025a034933 , Zm00025a018771
Brachypodium KQJ93002 , KQJ93003
Barley HORVU6Hr1G012050.1 , HORVU6Hr1G012050.3 , HORVU6Hr1G012050.4 , HORVU6Hr1G012050.5 , HORVU6Hr1G012050.6
Wheat TraesCS6B02G090300 , TraesCSU02G117100 , TraesCS6A02G067100
Populus -


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cDNA sequences
Sobic.004G019600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
2 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
3 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
4 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
5 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
6 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
7 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
8 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
9 Sobic.009G231900 expressed protein -
10 Sobic.004G186000 salt tolerant protein, putative, expressed -
11 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
12 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
13 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
14 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.010G051500 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
16 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
17 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
19 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
20 Sobic.007G102700 - -


Gene co-expression network
sample Sobic004G019600 Sobic004G019600 Sobic002G204000 Sobic002G204000 Sobic004G019600--Sobic002G204000 Sobic001G346300 Sobic001G346300 Sobic004G019600--Sobic001G346300 Sobic001G114500 Sobic001G114500 Sobic004G019600--Sobic001G114500 Sobic010G220900 Sobic010G220900 Sobic004G019600--Sobic010G220900 Sobic006G087100 Sobic006G087100 Sobic004G019600--Sobic006G087100 Sobic001G152000 Sobic001G152000 Sobic004G019600--Sobic001G152000 Sobic009G258400 Sobic009G258400 Sobic004G019600--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic004G019600--Sobic004G212700 Sobic009G231900 Sobic009G231900 Sobic004G019600--Sobic009G231900 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic001G346300--Sobic004G019600 Sobic001G346300--Sobic006G087100 Sobic001G291800 Sobic001G291800 Sobic001G346300--Sobic001G291800 Sobic001G346300--Sobic009G258400 Sobic010G186600 Sobic010G186600 Sobic001G346300--Sobic010G186600 Sobic006G010000 Sobic006G010000 Sobic001G346300--Sobic006G010000 Sobic001G346300--Sobic001G152000 Sobic001G346300--Sobic004G212700 Sobic006G233300 Sobic006G233300 Sobic001G346300--Sobic006G233300 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic010G220900--Sobic006G087100 Sobic010G220900--Sobic004G019600 Sobic010G220900--Sobic009G258400 Sobic001G532100 Sobic001G532100 Sobic010G220900--Sobic001G532100 Sobic009G201800 Sobic009G201800 Sobic010G220900--Sobic009G201800 Sobic009G212300 Sobic009G212300 Sobic010G220900--Sobic009G212300 Sobic004G249300 Sobic004G249300 Sobic010G220900--Sobic004G249300 Sobic008G118500 Sobic008G118500 Sobic010G220900--Sobic008G118500 Sobic001G469200 Sobic001G469200 Sobic010G220900--Sobic001G469200 Sobic006G087100--Sobic010G220900 Sobic006G087100--Sobic004G019600 Sobic006G087100--Sobic001G346300 Sobic009G108500 Sobic009G108500 Sobic006G087100--Sobic009G108500 Sobic006G087100--Sobic008G118500 Sobic004G133700 Sobic004G133700 Sobic006G087100--Sobic004G133700 Sobic001G218800 Sobic001G218800 Sobic006G087100--Sobic001G218800 Sobic003G122000 Sobic003G122000 Sobic006G087100--Sobic003G122000 Sobic002G359900 Sobic002G359900 Sobic006G087100--Sobic002G359900 Sobic002G268400 Sobic002G268400 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic009G033900 Sobic009G033900 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic003G405700 Sobic003G405700 Sobic001G152000--Sobic003G405700 Sobic006G183000 Sobic006G183000 Sobic001G152000--Sobic006G183000 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic009G258400--Sobic001G507400 Sobic004G129600 Sobic004G129600 Sobic004G212700--Sobic004G129600 Sobic004G206300 Sobic004G206300 Sobic004G212700--Sobic004G206300 Sobic004G212700--Sobic004G019600 Sobic006G245700 Sobic006G245700 Sobic004G212700--Sobic006G245700 Sobic004G212700--Sobic001G346300 Sobic003G274400 Sobic003G274400 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic002G394800 Sobic002G394800 Sobic004G212700--Sobic002G394800 Sobic004G198900 Sobic004G198900 Sobic004G212700--Sobic004G198900 Sobic009G231900--Sobic004G019600 Sobic009G231900--Sobic002G204000 Sobic003G316850 Sobic003G316850 Sobic009G231900--Sobic003G316850 Sobic009G231900--Sobic001G532100 Sobic003G434000 Sobic003G434000 Sobic009G231900--Sobic003G434000 Sobic010G051500 Sobic010G051500 Sobic009G231900--Sobic010G051500 Sobic001G370300 Sobic001G370300 Sobic009G231900--Sobic001G370300 Sobic009G231900--Sobic009G258400 Sobic006G049700 Sobic006G049700 Sobic009G231900--Sobic006G049700
Octagon: transcription factors


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