Gene annotation
Transcriptome id Sobic.009G231900.1
Synonym ATMMS21, HPY2, MMS21, Sb09g028460
Functional annotation expressed protein
UniProt C5YVJ5
Pfam PF11789
Panther DB PTHR21330 PTHR21330:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0000724; double-strand break repair via homologous recombination


Orthologs (automatic annotation)
TAIR AT3G15150 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g48880.1 : expressed protein
MaizeGDB (Corn) Zm00025a044565
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
2 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
3 Sobic.003G316850 - -
4 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
5 Sobic.003G434000 expressed protein K06170: PSENEN, presenilin enhancer 2
6 Sobic.010G051500 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
7 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
8 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
9 Sobic.006G049700 SAM domain family protein, expressed -
10 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
12 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
13 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
14 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
15 Sobic.004G186000 salt tolerant protein, putative, expressed -
16 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
17 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.001G041100 RNA recognition motif containing protein, putative, expressed K12833: pre-mRNA branch site protein p14
20 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C


Gene co-expression network
sample Sobic009G231900 Sobic009G231900 Sobic004G019600 Sobic004G019600 Sobic009G231900--Sobic004G019600 Sobic002G204000 Sobic002G204000 Sobic009G231900--Sobic002G204000 Sobic003G316850 Sobic003G316850 Sobic009G231900--Sobic003G316850 Sobic001G532100 Sobic001G532100 Sobic009G231900--Sobic001G532100 Sobic003G434000 Sobic003G434000 Sobic009G231900--Sobic003G434000 Sobic010G051500 Sobic010G051500 Sobic009G231900--Sobic010G051500 Sobic001G370300 Sobic001G370300 Sobic009G231900--Sobic001G370300 Sobic009G258400 Sobic009G258400 Sobic009G231900--Sobic009G258400 Sobic006G049700 Sobic006G049700 Sobic009G231900--Sobic006G049700 Sobic004G019600--Sobic002G204000 Sobic001G346300 Sobic001G346300 Sobic004G019600--Sobic001G346300 Sobic001G114500 Sobic001G114500 Sobic004G019600--Sobic001G114500 Sobic010G220900 Sobic010G220900 Sobic004G019600--Sobic010G220900 Sobic006G087100 Sobic006G087100 Sobic004G019600--Sobic006G087100 Sobic001G152000 Sobic001G152000 Sobic004G019600--Sobic001G152000 Sobic004G019600--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic004G019600--Sobic004G212700 Sobic004G019600--Sobic009G231900 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic003G316850--Sobic004G316900 Sobic001G501200 Sobic001G501200 Sobic003G316850--Sobic001G501200 Sobic004G339200 Sobic004G339200 Sobic003G316850--Sobic004G339200 Sobic003G316850--Sobic010G193800 Sobic003G316850--Sobic002G204000 Sobic009G256200 Sobic009G256200 Sobic003G316850--Sobic009G256200 Sobic003G316850--Sobic010G051500 Sobic010G221400 Sobic010G221400 Sobic003G316850--Sobic010G221400 Sobic003G043400 Sobic003G043400 Sobic003G316850--Sobic003G043400 Sobic008G137600 Sobic008G137600 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic001G349400 Sobic001G349400 Sobic003G434000--Sobic001G349400 Sobic002G051200 Sobic002G051200 Sobic003G434000--Sobic002G051200 Sobic006G099800 Sobic006G099800 Sobic003G434000--Sobic006G099800 Sobic009G052500 Sobic009G052500 Sobic003G434000--Sobic009G052500 Sobic004G012800 Sobic004G012800 Sobic003G434000--Sobic004G012800 Sobic007G038800 Sobic007G038800 Sobic003G434000--Sobic007G038800 Sobic001G041100 Sobic001G041100 Sobic003G434000--Sobic001G041100 Sobic003G434000--Sobic002G204000 Sobic003G434000--Sobic001G285300 Sobic004G018800 Sobic004G018800 Sobic010G051500--Sobic004G018800 Sobic010G051500--Sobic001G532100 Sobic010G051500--Sobic001G285300 Sobic007G203700 Sobic007G203700 Sobic010G051500--Sobic007G203700 Sobic010G051500--Sobic003G316850 Sobic006G143500 Sobic006G143500 Sobic010G051500--Sobic006G143500 Sobic003G424800 Sobic003G424800 Sobic010G051500--Sobic003G424800 Sobic010G051500--Sobic004G019600 Sobic010G051500--Sobic010G193800 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic010G247400 Sobic010G247400 Sobic001G370300--Sobic010G247400 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic003G132000 Sobic003G132000 Sobic009G258400--Sobic003G132000 Sobic009G258400--Sobic001G507400 Sobic009G222500 Sobic009G222500 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic003G264200 Sobic003G264200 Sobic006G049700--Sobic003G264200 Sobic006G101700 Sobic006G101700 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900
Octagon: transcription factors


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