Gene annotation
Transcriptome id Sobic.006G245700.1,Sobic.006G245700.2
Synonym CSN5, CSN5B, AJH2, Sb06g031140
Functional annotation COP9 signalosome complex subunit 5b, putative, expressed
UniProt A0A1B6PNP8 , A0A1B6PNQ1
Pfam PF01398
Panther DB PTHR10410 PTHR10410:SF6
NCBI CDD KOG1554; COP9 signalosome, subunit CSN5
KEGG Orthology K09613; COPS5, COP9 signalosome complex subunit 5
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G71230 : COP9-signalosome 5B
RAP-DB (Rice) LOC_Os04g56070.1 : COP9 signalosome complex subunit 5b, putative, expressed
MaizeGDB (Corn) Zm00025a009492
Brachypodium PNT62040
Barley HORVU1Hr1G008160.1 , HORVU1Hr1G008160.3 , HORVU4Hr1G047410.1 , HORVU4Hr1G047410.2 , HORVU3Hr1G054660.1 , HORVU3Hr1G113750.2 , HORVU3Hr1G113750.3 , HORVU3Hr1G113750.1 , HORVU3Hr1G113750.4 , HORVU2Hr1G056160.1 , HORVU2Hr1G056160.2 , HORVU2Hr1G056160.4 , HORVU2Hr1G056160.5 , HORVU2Hr1G067660.1 , HORVU6Hr1G000630.2 , HORVU6Hr1G000630.1 , HORVU0Hr1G018470.2 , HORVU0Hr1G018470.1 , HORVU5Hr1G076290.4 , HORVU5Hr1G076290.3 , HORVU5Hr1G076290.2 , HORVU5Hr1G076290.1 , HORVU0Hr1G025410.1 , HORVU4Hr1G048730.1 , HORVU6Hr1G023630.1 , HORVU6Hr1G058050.2 , HORVU6Hr1G058050.3 , HORVU6Hr1G058050.1 , HORVU6Hr1G058050.4 , HORVU1Hr1G017260.3 , HORVU1Hr1G017260.2 , HORVU1Hr1G017260.1 , HORVU2Hr1G112000.1 , HORVU3Hr1G021300.2 , HORVU3Hr1G021300.1 , HORVU7Hr1G078010.1 , HORVU7Hr1G078010.2
Wheat TraesCS2A02G504600 , TraesCS2D02G505300
Populus -


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cDNA sequences
Sobic.006G245700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
2 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
3 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
4 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
5 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
6 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
7 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
8 Sobic.003G221500 CENP-C1, putative, expressed -
9 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
10 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
11 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
12 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
13 Sobic.002G430900 PWWP domain containing protein, expressed -
14 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
15 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
16 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
17 Sobic.009G060400 proline-rich family protein, putative, expressed -
18 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
19 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
20 Sobic.002G142700 PPR repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G245700 Sobic006G245700 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic004G256300--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic004G256300--Sobic003G222700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic001G370300--Sobic006G245700 Sobic010G247400 Sobic010G247400 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic008G125000--Sobic001G115500 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic003G274400--Sobic006G245700 Sobic003G274400--Sobic001G436300 Sobic007G125700 Sobic007G125700 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic002G017900 Sobic002G017900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic006G233300 Sobic006G233300 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic002G394800--Sobic001G370300 Sobic002G394800--Sobic004G249300 Sobic002G394800--Sobic002G430900 Sobic006G127500 Sobic006G127500 Sobic001G436300--Sobic006G127500 Sobic001G235700 Sobic001G235700 Sobic001G436300--Sobic001G235700 Sobic001G436300--Sobic001G115500 Sobic001G436300--Sobic003G274400 Sobic001G436300--Sobic001G008500 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic003G221500--Sobic004G256300 Sobic003G221500--Sobic002G142700 Sobic003G221500--Sobic003G004600 Sobic010G236200 Sobic010G236200 Sobic003G221500--Sobic010G236200 Sobic001G462600 Sobic001G462600 Sobic003G221500--Sobic001G462600 Sobic003G221500--Sobic006G245700 Sobic009G032200 Sobic009G032200 Sobic003G221500--Sobic009G032200 Sobic010G154000 Sobic010G154000 Sobic003G221500--Sobic010G154000 Sobic003G221500--Sobic003G222700 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic001G157600--Sobic006G245700 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G157600--Sobic001G436300 Sobic001G157600--Sobic001G115500 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000
Octagon: transcription factors


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