Gene annotation
Transcriptome id Sobic.003G221500.1
Synonym CENP-C, Sb03g027990
Functional annotation CENP-C1, putative, expressed
UniProt A0A1B6Q4S2 , Q66LH5
Pfam -
Panther DB PTHR16684
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0000776; kinetochore


Orthologs (automatic annotation)
TAIR AT1G15660 : centromere protein C
RAP-DB (Rice) LOC_Os01g43050.1 : CENP-C1, putative, expressed
MaizeGDB (Corn) Zm00025a028407 , Zm00025a000511 , Zm00025a000526 , Zm00025a038530
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G221500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
2 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
3 Sobic.003G004600 expressed protein -
4 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
5 Sobic.001G462600 retinoblastoma-binding protein-like, putative, expressed K14961: RBBP5, SWD1, COMPASS component SWD1
6 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
7 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
8 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
9 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
10 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
11 Sobic.004G177600 DDT domain containing protein, putative, expressed -
12 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
13 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
14 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
15 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7
17 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
18 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
19 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
20 Sobic.004G320100 expressed protein -


Gene co-expression network
sample Sobic003G221500 Sobic003G221500 Sobic004G256300 Sobic004G256300 Sobic003G221500--Sobic004G256300 Sobic002G142700 Sobic002G142700 Sobic003G221500--Sobic002G142700 Sobic003G004600 Sobic003G004600 Sobic003G221500--Sobic003G004600 Sobic010G236200 Sobic010G236200 Sobic003G221500--Sobic010G236200 Sobic001G462600 Sobic001G462600 Sobic003G221500--Sobic001G462600 Sobic006G245700 Sobic006G245700 Sobic003G221500--Sobic006G245700 Sobic009G032200 Sobic009G032200 Sobic003G221500--Sobic009G032200 Sobic010G154000 Sobic010G154000 Sobic003G221500--Sobic010G154000 Sobic003G222700 Sobic003G222700 Sobic003G221500--Sobic003G222700 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic004G256300--Sobic003G004600 Sobic002G399900 Sobic002G399900 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G208400 Sobic002G208400 Sobic002G142700--Sobic002G208400 Sobic002G142700--Sobic004G256300 Sobic002G142700--Sobic003G221500 Sobic002G142700--Sobic003G222700 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic002G306600 Sobic002G306600 Sobic003G004600--Sobic002G306600 Sobic003G004600--Sobic003G221500 Sobic003G004600--Sobic004G256300 Sobic003G004600--Sobic003G222700 Sobic007G148400 Sobic007G148400 Sobic003G004600--Sobic007G148400 Sobic004G063300 Sobic004G063300 Sobic003G004600--Sobic004G063300 Sobic003G010900 Sobic003G010900 Sobic003G004600--Sobic003G010900 Sobic003G132000 Sobic003G132000 Sobic003G004600--Sobic003G132000 Sobic003G128300 Sobic003G128300 Sobic003G004600--Sobic003G128300 Sobic010G236200--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic010G236200--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic010G236200--Sobic010G149600 Sobic004G043750 Sobic004G043750 Sobic010G236200--Sobic004G043750 Sobic010G236200--Sobic003G221500 Sobic004G111000 Sobic004G111000 Sobic010G236200--Sobic004G111000 Sobic002G254800 Sobic002G254800 Sobic010G236200--Sobic002G254800 Sobic009G257500 Sobic009G257500 Sobic010G236200--Sobic009G257500 Sobic007G125700 Sobic007G125700 Sobic010G236200--Sobic007G125700 Sobic001G462600--Sobic003G221500 Sobic006G188500 Sobic006G188500 Sobic001G462600--Sobic006G188500 Sobic001G462600--Sobic002G142700 Sobic001G462600--Sobic004G256300 Sobic001G462600--Sobic003G128300 Sobic004G177600 Sobic004G177600 Sobic001G462600--Sobic004G177600 Sobic001G462600--Sobic003G222700 Sobic006G212900 Sobic006G212900 Sobic001G462600--Sobic006G212900 Sobic004G315500 Sobic004G315500 Sobic001G462600--Sobic004G315500 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic008G057000 Sobic008G057000 Sobic009G032200--Sobic008G057000 Sobic009G032200--Sobic009G257500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic004G320100 Sobic004G320100 Sobic010G154000--Sobic004G320100 Sobic006G120800 Sobic006G120800 Sobic010G154000--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic010G154000--Sobic001G507400 Sobic006G049100 Sobic006G049100 Sobic010G154000--Sobic006G049100 Sobic010G154000--Sobic001G487100 Sobic010G154000--Sobic006G245700 Sobic010G154000--Sobic003G221500 Sobic009G258400 Sobic009G258400 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic003G222700--Sobic002G399900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.