Gene annotation
Transcriptome id Sobic.001G335500.1
Synonym Sb01g032380
Functional annotation RNA-binding protein-like, putative, expressed
UniProt C5WWJ3
Pfam PF00076 PF02136
Panther DB PTHR10693 PTHR10693:SF25
NCBI CDD KOG0116; RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0006810transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT3G25150 : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
RAP-DB (Rice) LOC_Os03g30550.1 : RNA-binding protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a052188
Brachypodium KQK21281
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G067400 expressed protein -
2 Sobic.006G120800 transglutaminase, putative, expressed -
3 Sobic.003G253400 expressed protein -
4 Sobic.007G183300 expressed protein -
5 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
6 Sobic.004G129600 expressed protein -
7 Sobic.002G408600 expressed protein -
8 Sobic.010G279900 PHD-finger domain containing protein, expressed -
9 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
10 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
11 Sobic.003G221500 CENP-C1, putative, expressed -
12 Sobic.010G197800 expressed protein -
13 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
14 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
15 Sobic.007G050300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
17 Sobic.002G263700 bromodomain protein 103, putative, expressed -
18 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
19 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
20 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7


Gene co-expression network
sample Sobic001G335500 Sobic001G335500 Sobic004G067400 Sobic004G067400 Sobic001G335500--Sobic004G067400 Sobic006G120800 Sobic006G120800 Sobic001G335500--Sobic006G120800 Sobic003G253400 Sobic003G253400 Sobic001G335500--Sobic003G253400 Sobic007G183300 Sobic007G183300 Sobic001G335500--Sobic007G183300 Sobic009G258400 Sobic009G258400 Sobic001G335500--Sobic009G258400 Sobic004G129600 Sobic004G129600 Sobic001G335500--Sobic004G129600 Sobic002G408600 Sobic002G408600 Sobic001G335500--Sobic002G408600 Sobic010G279900 Sobic010G279900 Sobic001G335500--Sobic010G279900 Sobic005G115500 Sobic005G115500 Sobic001G335500--Sobic005G115500 Sobic004G067400--Sobic001G335500 Sobic001G334100 Sobic001G334100 Sobic004G067400--Sobic001G334100 Sobic004G067400--Sobic006G120800 Sobic002G142700 Sobic002G142700 Sobic004G067400--Sobic002G142700 Sobic004G067400--Sobic003G253400 Sobic004G067400--Sobic002G408600 Sobic004G067400--Sobic009G258400 Sobic009G036200 Sobic009G036200 Sobic004G067400--Sobic009G036200 Sobic010G215900 Sobic010G215900 Sobic004G067400--Sobic010G215900 Sobic001G038100 Sobic001G038100 Sobic006G120800--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic006G120800--Sobic007G117100 Sobic006G120800--Sobic009G258400 Sobic001G507400 Sobic001G507400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G261100 Sobic006G261100 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic006G120800--Sobic001G335500 Sobic003G253400--Sobic010G279900 Sobic003G062400 Sobic003G062400 Sobic003G253400--Sobic003G062400 Sobic001G395100 Sobic001G395100 Sobic003G253400--Sobic001G395100 Sobic005G040900 Sobic005G040900 Sobic003G253400--Sobic005G040900 Sobic005G025800 Sobic005G025800 Sobic003G253400--Sobic005G025800 Sobic009G192500 Sobic009G192500 Sobic003G253400--Sobic009G192500 Sobic004G347100 Sobic004G347100 Sobic003G253400--Sobic004G347100 Sobic003G253400--Sobic007G183300 Sobic008G058800 Sobic008G058800 Sobic003G253400--Sobic008G058800 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic002G145800 Sobic002G145800 Sobic007G183300--Sobic002G145800 Sobic003G416700 Sobic003G416700 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic007G183300--Sobic010G279900 Sobic002G154000 Sobic002G154000 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic003G132000 Sobic003G132000 Sobic009G258400--Sobic003G132000 Sobic009G258400--Sobic001G507400 Sobic004G212700 Sobic004G212700 Sobic004G129600--Sobic004G212700 Sobic004G206300 Sobic004G206300 Sobic004G129600--Sobic004G206300 Sobic003G274400 Sobic003G274400 Sobic004G129600--Sobic003G274400 Sobic009G031500 Sobic009G031500 Sobic004G129600--Sobic009G031500 Sobic004G129600--Sobic001G335500 Sobic007G125700 Sobic007G125700 Sobic004G129600--Sobic007G125700 Sobic007G153700 Sobic007G153700 Sobic004G129600--Sobic007G153700 Sobic004G043750 Sobic004G043750 Sobic004G129600--Sobic004G043750 Sobic002G017900 Sobic002G017900 Sobic004G129600--Sobic002G017900 Sobic010G278600 Sobic010G278600 Sobic002G408600--Sobic010G278600 Sobic009G074700 Sobic009G074700 Sobic002G408600--Sobic009G074700 Sobic002G408600--Sobic001G334100 Sobic005G199200 Sobic005G199200 Sobic002G408600--Sobic005G199200 Sobic009G126800 Sobic009G126800 Sobic002G408600--Sobic009G126800 Sobic002G262700 Sobic002G262700 Sobic002G408600--Sobic002G262700 Sobic002G408600--Sobic001G335500 Sobic003G184400 Sobic003G184400 Sobic002G408600--Sobic003G184400 Sobic002G408600--Sobic004G067400 Sobic004G156500 Sobic004G156500 Sobic010G279900--Sobic004G156500 Sobic010G279900--Sobic007G183300 Sobic004G086200 Sobic004G086200 Sobic010G279900--Sobic004G086200 Sobic001G367100 Sobic001G367100 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic003G409200 Sobic003G409200 Sobic010G279900--Sobic003G409200 Sobic010G279900--Sobic003G253400 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic005G115500--Sobic001G291800 Sobic001G145400 Sobic001G145400 Sobic005G115500--Sobic001G145400 Sobic001G248100 Sobic001G248100 Sobic005G115500--Sobic001G248100 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic005G115500--Sobic001G051700
Octagon: transcription factors


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