Gene annotation
Transcriptome id Sobic.004G129600.1
Synonym Sb04g011230
Functional annotation expressed protein
UniProt C5Y071
Pfam PF04504
Panther DB PTHR31662 PTHR31662:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os02g18660.1 : expressed protein
MaizeGDB (Corn) Zm00025a034340 , Zm00025a019763
Brachypodium KQJ96045
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G129600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
2 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
3 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
4 Sobic.009G031500 agenet domain containing protein, putative, expressed -
5 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
6 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
7 Sobic.007G153700 transcription regulator, putative, expressed -
8 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
9 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
10 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
12 Sobic.004G198900 expressed protein -
13 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
15 Sobic.003G231100 dnaJ domain containing protein, expressed -
16 Sobic.010G197800 expressed protein -
17 Sobic.002G214700 DNA repair metallo-beta-lactamase family protein, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
18 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
19 Sobic.006G280100 SET domain containing protein, expressed -
20 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic004G129600 Sobic004G129600 Sobic004G212700 Sobic004G212700 Sobic004G129600--Sobic004G212700 Sobic004G206300 Sobic004G206300 Sobic004G129600--Sobic004G206300 Sobic003G274400 Sobic003G274400 Sobic004G129600--Sobic003G274400 Sobic009G031500 Sobic009G031500 Sobic004G129600--Sobic009G031500 Sobic001G335500 Sobic001G335500 Sobic004G129600--Sobic001G335500 Sobic007G125700 Sobic007G125700 Sobic004G129600--Sobic007G125700 Sobic007G153700 Sobic007G153700 Sobic004G129600--Sobic007G153700 Sobic004G043750 Sobic004G043750 Sobic004G129600--Sobic004G043750 Sobic002G017900 Sobic002G017900 Sobic004G129600--Sobic002G017900 Sobic004G212700--Sobic004G129600 Sobic004G212700--Sobic004G206300 Sobic004G019600 Sobic004G019600 Sobic004G212700--Sobic004G019600 Sobic006G245700 Sobic006G245700 Sobic004G212700--Sobic006G245700 Sobic001G346300 Sobic001G346300 Sobic004G212700--Sobic001G346300 Sobic004G212700--Sobic003G274400 Sobic010G154000 Sobic010G154000 Sobic004G212700--Sobic010G154000 Sobic002G394800 Sobic002G394800 Sobic004G212700--Sobic002G394800 Sobic004G198900 Sobic004G198900 Sobic004G212700--Sobic004G198900 Sobic004G206300--Sobic004G212700 Sobic004G027000 Sobic004G027000 Sobic004G206300--Sobic004G027000 Sobic009G056300 Sobic009G056300 Sobic004G206300--Sobic009G056300 Sobic004G206300--Sobic004G129600 Sobic004G206300--Sobic009G031500 Sobic008G125000 Sobic008G125000 Sobic004G206300--Sobic008G125000 Sobic004G225300 Sobic004G225300 Sobic004G206300--Sobic004G225300 Sobic004G206300--Sobic001G335500 Sobic001G099800 Sobic001G099800 Sobic004G206300--Sobic001G099800 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic003G274400--Sobic007G125700 Sobic003G274400--Sobic009G031500 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic004G207000 Sobic004G207000 Sobic009G031500--Sobic004G207000 Sobic001G540700 Sobic001G540700 Sobic009G031500--Sobic001G540700 Sobic006G126600 Sobic006G126600 Sobic009G031500--Sobic006G126600 Sobic009G031500--Sobic007G125700 Sobic001G487200 Sobic001G487200 Sobic009G031500--Sobic001G487200 Sobic009G031500--Sobic003G274400 Sobic003G077500 Sobic003G077500 Sobic009G031500--Sobic003G077500 Sobic009G031500--Sobic004G206300 Sobic003G027800 Sobic003G027800 Sobic009G031500--Sobic003G027800 Sobic004G067400 Sobic004G067400 Sobic001G335500--Sobic004G067400 Sobic006G120800 Sobic006G120800 Sobic001G335500--Sobic006G120800 Sobic003G253400 Sobic003G253400 Sobic001G335500--Sobic003G253400 Sobic007G183300 Sobic007G183300 Sobic001G335500--Sobic007G183300 Sobic009G258400 Sobic009G258400 Sobic001G335500--Sobic009G258400 Sobic001G335500--Sobic004G129600 Sobic002G408600 Sobic002G408600 Sobic001G335500--Sobic002G408600 Sobic010G279900 Sobic010G279900 Sobic001G335500--Sobic010G279900 Sobic005G115500 Sobic005G115500 Sobic001G335500--Sobic005G115500 Sobic007G125700--Sobic002G430900 Sobic007G125700--Sobic004G207000 Sobic010G149600 Sobic010G149600 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic007G125700--Sobic003G077500 Sobic001G395200 Sobic001G395200 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic001G239100 Sobic001G239100 Sobic007G153700--Sobic001G239100 Sobic001G468000 Sobic001G468000 Sobic007G153700--Sobic001G468000 Sobic009G006900 Sobic009G006900 Sobic007G153700--Sobic009G006900 Sobic001G440900 Sobic001G440900 Sobic007G153700--Sobic001G440900 Sobic007G153700--Sobic003G274400 Sobic010G237800 Sobic010G237800 Sobic007G153700--Sobic010G237800 Sobic007G153700--Sobic004G129600 Sobic002G374200 Sobic002G374200 Sobic007G153700--Sobic002G374200 Sobic002G196500 Sobic002G196500 Sobic007G153700--Sobic002G196500 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic010G236200 Sobic010G236200 Sobic004G043750--Sobic010G236200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic004G043750--Sobic010G269300 Sobic004G043750--Sobic007G125700 Sobic010G233000 Sobic010G233000 Sobic004G043750--Sobic010G233000 Sobic002G017900--Sobic002G430900 Sobic002G017900--Sobic004G198900 Sobic005G120700 Sobic005G120700 Sobic002G017900--Sobic005G120700 Sobic002G017900--Sobic007G125700 Sobic002G017900--Sobic003G274400 Sobic002G017900--Sobic009G006900 Sobic002G177500 Sobic002G177500 Sobic002G017900--Sobic002G177500 Sobic002G339800 Sobic002G339800 Sobic002G017900--Sobic002G339800 Sobic002G017900--Sobic004G207000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.