Gene annotation
Transcriptome id Sobic.002G214700.1
Synonym Sb02g025710
Functional annotation DNA repair metallo-beta-lactamase family protein, expressed
UniProt A0A1B6QCQ5
Pfam PF12706 PF00536 PF07522
Panther DB PTHR23240 PTHR23240:SF10
NCBI CDD KOG1361; Predicted hydrolase involved in interstrand cross-link repair
KEGG Orthology K15340; DCLRE1A, SNM1A, DNA cross-link repair 1A protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G45700 : sterile alpha motif (SAM) domain-containing protein
RAP-DB (Rice) LOC_Os09g26760.1 : DNA repair metallo-beta-lactamase family protein, expressed
MaizeGDB (Corn) Zm00025a013980
Brachypodium PNT64672 , KQJ90393
Barley HORVU5Hr1G062320.10 , HORVU5Hr1G062320.11 , HORVU5Hr1G062320.6 , HORVU5Hr1G062320.7 , HORVU5Hr1G062320.4 , HORVU5Hr1G062320.5 , HORVU5Hr1G062320.2 , HORVU5Hr1G062320.3 , HORVU5Hr1G062320.1 , HORVU5Hr1G062320.8 , HORVU5Hr1G062320.9
Wheat TraesCS5A02G212600 , TraesCS5A02G212600 , TraesCS5D02G219400 , TraesCS5D02G219400 , TraesCS5B02G211100 , TraesCS5A02G212600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
2 Sobic.010G250800 DNA binding protein, putative, expressed -
3 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
4 Sobic.003G231100 dnaJ domain containing protein, expressed -
5 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
6 Sobic.004G129600 expressed protein -
7 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
8 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
9 Sobic.007G006800 pentatricopeptide, putative, expressed -
10 Sobic.004G307900 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
11 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
12 Sobic.006G280100 SET domain containing protein, expressed -
13 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
14 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
15 Sobic.002G161700 Myb-like DNA-binding domain containing protein, putative, expressed -
16 Sobic.009G031500 agenet domain containing protein, putative, expressed -
17 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
18 Sobic.001G349700 CPuORF35 - conserved peptide uORF-containing transcript, expressed -
19 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms


Gene co-expression network
sample Sobic002G214700 Sobic002G214700 Sobic002G152900 Sobic002G152900 Sobic002G214700--Sobic002G152900 Sobic010G250800 Sobic010G250800 Sobic002G214700--Sobic010G250800 Sobic004G038100 Sobic004G038100 Sobic002G214700--Sobic004G038100 Sobic003G231100 Sobic003G231100 Sobic002G214700--Sobic003G231100 Sobic003G369200 Sobic003G369200 Sobic002G214700--Sobic003G369200 Sobic004G129600 Sobic004G129600 Sobic002G214700--Sobic004G129600 Sobic003G393100 Sobic003G393100 Sobic002G214700--Sobic003G393100 Sobic003G274400 Sobic003G274400 Sobic002G214700--Sobic003G274400 Sobic007G006800 Sobic007G006800 Sobic002G214700--Sobic007G006800 Sobic002G152900--Sobic004G038100 Sobic002G152900--Sobic002G214700 Sobic002G152900--Sobic010G250800 Sobic007G114000 Sobic007G114000 Sobic002G152900--Sobic007G114000 Sobic001G368100 Sobic001G368100 Sobic002G152900--Sobic001G368100 Sobic004G215900 Sobic004G215900 Sobic002G152900--Sobic004G215900 Sobic002G056400 Sobic002G056400 Sobic002G152900--Sobic002G056400 Sobic003G250900 Sobic003G250900 Sobic002G152900--Sobic003G250900 Sobic006G181800 Sobic006G181800 Sobic002G152900--Sobic006G181800 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic010G250800--Sobic004G038100 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic003G231100--Sobic003G250900 Sobic002G320600 Sobic002G320600 Sobic003G231100--Sobic002G320600 Sobic003G231100--Sobic002G214700 Sobic003G231100--Sobic003G369200 Sobic003G231100--Sobic003G393100 Sobic008G015200 Sobic008G015200 Sobic003G231100--Sobic008G015200 Sobic008G192700 Sobic008G192700 Sobic003G231100--Sobic008G192700 Sobic009G190200 Sobic009G190200 Sobic003G231100--Sobic009G190200 Sobic003G231100--Sobic004G129600 Sobic010G147700 Sobic010G147700 Sobic003G369200--Sobic010G147700 Sobic005G110535 Sobic005G110535 Sobic003G369200--Sobic005G110535 Sobic009G087000 Sobic009G087000 Sobic003G369200--Sobic009G087000 Sobic003G201000 Sobic003G201000 Sobic003G369200--Sobic003G201000 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G183700 Sobic003G183700 Sobic003G369200--Sobic003G183700 Sobic006G029300 Sobic006G029300 Sobic003G369200--Sobic006G029300 Sobic007G168900 Sobic007G168900 Sobic003G369200--Sobic007G168900 Sobic004G212700 Sobic004G212700 Sobic004G129600--Sobic004G212700 Sobic004G206300 Sobic004G206300 Sobic004G129600--Sobic004G206300 Sobic004G129600--Sobic003G274400 Sobic009G031500 Sobic009G031500 Sobic004G129600--Sobic009G031500 Sobic001G335500 Sobic001G335500 Sobic004G129600--Sobic001G335500 Sobic007G125700 Sobic007G125700 Sobic004G129600--Sobic007G125700 Sobic007G153700 Sobic007G153700 Sobic004G129600--Sobic007G153700 Sobic004G043750 Sobic004G043750 Sobic004G129600--Sobic004G043750 Sobic002G017900 Sobic002G017900 Sobic004G129600--Sobic002G017900 Sobic003G393100--Sobic009G184200 Sobic002G204400 Sobic002G204400 Sobic003G393100--Sobic002G204400 Sobic003G393100--Sobic003G369200 Sobic001G398400 Sobic001G398400 Sobic003G393100--Sobic001G398400 Sobic008G148000 Sobic008G148000 Sobic003G393100--Sobic008G148000 Sobic006G281400 Sobic006G281400 Sobic003G393100--Sobic006G281400 Sobic008G070700 Sobic008G070700 Sobic003G393100--Sobic008G070700 Sobic007G007800 Sobic007G007800 Sobic003G393100--Sobic007G007800 Sobic004G321400 Sobic004G321400 Sobic003G393100--Sobic004G321400 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic006G245700 Sobic006G245700 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic003G274400--Sobic007G125700 Sobic003G274400--Sobic009G031500 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic003G274400--Sobic006G280100 Sobic007G006800--Sobic010G250800 Sobic001G199500 Sobic001G199500 Sobic007G006800--Sobic001G199500 Sobic007G006800--Sobic001G408300 Sobic007G006800--Sobic005G088900 Sobic008G113300 Sobic008G113300 Sobic007G006800--Sobic008G113300 Sobic002G021200 Sobic002G021200 Sobic007G006800--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic007G006800--Sobic006G281900 Sobic007G006800--Sobic003G369200 Sobic002G215200 Sobic002G215200 Sobic007G006800--Sobic002G215200
Octagon: transcription factors


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