Gene annotation
Transcriptome id Sobic.004G307900.1,Sobic.004G307900.2
Synonym CHR25, RAD54, ATRAD54
Functional annotation expressed protein
UniProt C5XST0 , A0A1Z5RPX4
Pfam PF04851 PF00271
Panther DB PTHR10799
NCBI CDD KOG4439; RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily KOG1001Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily KOG1002Nucleotide excision repair protein RAD16
KEGG Orthology K10875; RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G19210 : homolog of RAD54
RAP-DB (Rice) LOC_Os02g52510.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022212
Brachypodium PNT69579 , PNT69578 , PNT69577 , KQK01769 , KQK01768
Barley HORVU6Hr1G078680.48 , HORVU6Hr1G078680.49 , HORVU6Hr1G078680.46 , HORVU6Hr1G078680.47 , HORVU6Hr1G078680.44 , HORVU6Hr1G078680.45 , HORVU6Hr1G078680.42 , HORVU6Hr1G078680.43 , HORVU6Hr1G078680.40 , HORVU6Hr1G078680.41 , HORVU6Hr1G078680.39 , HORVU6Hr1G078680.38 , HORVU6Hr1G078680.33 , HORVU6Hr1G078680.32 , HORVU6Hr1G078680.31 , HORVU6Hr1G078680.30 , HORVU6Hr1G078680.37 , HORVU6Hr1G078680.36 , HORVU6Hr1G078680.35 , HORVU6Hr1G078680.34 , HORVU6Hr1G078680.9 , HORVU6Hr1G078680.8 , HORVU6Hr1G078680.1 , HORVU6Hr1G078680.3 , HORVU6Hr1G078680.2 , HORVU6Hr1G078680.5 , HORVU6Hr1G078680.4 , HORVU6Hr1G078680.7 , HORVU6Hr1G078680.6 , HORVU1Hr1G071540.2 , HORVU1Hr1G071540.1 , HORVU7Hr1G119270.3 , HORVU7Hr1G119270.1 , HORVU7Hr1G119270.4 , HORVU6Hr1G078680.28 , HORVU6Hr1G078680.29 , HORVU6Hr1G078680.20 , HORVU6Hr1G078680.21 , HORVU6Hr1G078680.22 , HORVU6Hr1G078680.23 , HORVU6Hr1G078680.24 , HORVU6Hr1G078680.25 , HORVU6Hr1G078680.26 , HORVU6Hr1G078680.27 , HORVU6Hr1G078680.19 , HORVU6Hr1G078680.18 , HORVU6Hr1G078680.15 , HORVU6Hr1G078680.14 , HORVU6Hr1G078680.17 , HORVU6Hr1G078680.16 , HORVU6Hr1G078680.11 , HORVU6Hr1G078680.10 , HORVU6Hr1G078680.13 , HORVU6Hr1G078680.12
Wheat TraesCS6D02G300900 , TraesCS6A02G321200 , TraesCS6B02G351900 , TraesCS6B02G351900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
2 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
3 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
4 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
5 Sobic.003G423600 expressed protein K06228: fused
6 Sobic.006G281400 expressed protein -
7 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
8 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
9 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
10 Sobic.007G188001 - K11844: ubiquitin carboxyl-terminal hydrolase 16/45
11 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
12 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
13 Sobic.007G184100 expressed protein -
14 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
15 Sobic.001G025900 expressed protein -
16 Sobic.002G272300 expressed protein -
17 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
18 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
19 Sobic.002G303800 expressed protein -
20 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma


Gene co-expression network
sample Sobic004G307900 Sobic004G307900 Sobic003G393100 Sobic003G393100 Sobic004G307900--Sobic003G393100 Sobic001G377700 Sobic001G377700 Sobic004G307900--Sobic001G377700 Sobic003G369200 Sobic003G369200 Sobic004G307900--Sobic003G369200 Sobic009G184200 Sobic009G184200 Sobic004G307900--Sobic009G184200 Sobic003G423600 Sobic003G423600 Sobic004G307900--Sobic003G423600 Sobic006G281400 Sobic006G281400 Sobic004G307900--Sobic006G281400 Sobic002G290000 Sobic002G290000 Sobic004G307900--Sobic002G290000 Sobic004G156200 Sobic004G156200 Sobic004G307900--Sobic004G156200 Sobic002G204400 Sobic002G204400 Sobic004G307900--Sobic002G204400 Sobic003G393100--Sobic009G184200 Sobic003G393100--Sobic002G204400 Sobic003G393100--Sobic003G369200 Sobic001G398400 Sobic001G398400 Sobic003G393100--Sobic001G398400 Sobic008G148000 Sobic008G148000 Sobic003G393100--Sobic008G148000 Sobic003G393100--Sobic006G281400 Sobic008G070700 Sobic008G070700 Sobic003G393100--Sobic008G070700 Sobic007G007800 Sobic007G007800 Sobic003G393100--Sobic007G007800 Sobic004G321400 Sobic004G321400 Sobic003G393100--Sobic004G321400 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic003G183700 Sobic003G183700 Sobic001G377700--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic001G377700--Sobic005G110535 Sobic003G055600 Sobic003G055600 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic007G187700 Sobic007G187700 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic005G157300 Sobic005G157300 Sobic001G377700--Sobic005G157300 Sobic010G147700 Sobic010G147700 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic009G087000 Sobic009G087000 Sobic003G369200--Sobic009G087000 Sobic003G201000 Sobic003G201000 Sobic003G369200--Sobic003G201000 Sobic003G369200--Sobic003G393100 Sobic003G369200--Sobic009G184200 Sobic003G369200--Sobic003G183700 Sobic006G029300 Sobic006G029300 Sobic003G369200--Sobic006G029300 Sobic007G168900 Sobic007G168900 Sobic003G369200--Sobic007G168900 Sobic009G184200--Sobic002G204400 Sobic010G105400 Sobic010G105400 Sobic009G184200--Sobic010G105400 Sobic009G184200--Sobic001G398400 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic003G032200 Sobic003G032200 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic003G423600--Sobic006G281400 Sobic003G423600--Sobic008G148000 Sobic005G000500 Sobic005G000500 Sobic003G423600--Sobic005G000500 Sobic003G423600--Sobic004G156200 Sobic003G423600--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic003G423600--Sobic002G296000 Sobic003G423600--Sobic003G369200 Sobic003G423600--Sobic007G168900 Sobic003G423600--Sobic005G110535 Sobic006G281400--Sobic002G204400 Sobic006G281400--Sobic003G423600 Sobic006G281400--Sobic008G148000 Sobic006G281400--Sobic005G000500 Sobic006G281400--Sobic001G398400 Sobic006G281400--Sobic010G105400 Sobic006G281400--Sobic003G369200 Sobic006G281400--Sobic005G110535 Sobic006G281400--Sobic004G156200 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic002G290000--Sobic009G087000 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic002G290000--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic004G156200--Sobic005G110535 Sobic005G068800 Sobic005G068800 Sobic004G156200--Sobic005G068800 Sobic004G156200--Sobic003G423600 Sobic004G156200--Sobic002G290000 Sobic004G156200--Sobic009G087000 Sobic004G156200--Sobic006G281400 Sobic004G156200--Sobic003G369200 Sobic009G146250 Sobic009G146250 Sobic004G156200--Sobic009G146250 Sobic009G052100 Sobic009G052100 Sobic004G156200--Sobic009G052100 Sobic002G204400--Sobic009G184200 Sobic002G204400--Sobic008G148000 Sobic002G204400--Sobic003G393100 Sobic002G204400--Sobic010G105400 Sobic002G204400--Sobic006G281400 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic002G204400--Sobic001G398400 Sobic004G271300 Sobic004G271300 Sobic002G204400--Sobic004G271300
Octagon: transcription factors


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