Gene annotation
Transcriptome id Sobic.003G393100.1
Synonym Sb03g043060, SMC2, TTN3, ATCAP-E1, ATSMC4
Functional annotation chromosome segregation protein, putative, expressed
UniProt A0A097PJ86 , C5XFG9
Pfam PF13476 PF06470 PF02463
Panther DB PTHR18937 PTHR18937:SF9
NCBI CDD -
KEGG Orthology K06674; structural maintenance of chromosome 2
Gene Ontology GO:0005694; chromosome GO:0005524ATP binding GO:0005515protein binding GO:0007076mitotic chromosome condensation GO:0000796condensin complex


Orthologs (automatic annotation)
TAIR AT5G62410 : structural maintenance of chromosomes 2
RAP-DB (Rice) LOC_Os01g67740.1 : chromosome segregation protein, putative, expressed
MaizeGDB (Corn) Zm00025a026380
Brachypodium KQK11077 , KQK11078 , KQK11079
Barley HORVU3Hr1G088700.10 , HORVU3Hr1G088700.11 , HORVU3Hr1G088700.12 , HORVU3Hr1G088700.13 , HORVU3Hr1G088700.14 , HORVU3Hr1G088700.15 , HORVU3Hr1G088700.16 , HORVU3Hr1G088700.17 , HORVU3Hr1G088700.19 , HORVU3Hr1G088700.25 , HORVU3Hr1G088700.24 , HORVU3Hr1G088700.27 , HORVU3Hr1G088700.26 , HORVU3Hr1G088700.21 , HORVU3Hr1G088700.20 , HORVU3Hr1G088700.23 , HORVU3Hr1G088700.22 , HORVU3Hr1G088700.29 , HORVU3Hr1G088700.28 , HORVU3Hr1G088700.32 , HORVU3Hr1G088700.33 , HORVU3Hr1G088700.30 , HORVU3Hr1G088700.31 , HORVU3Hr1G088700.36 , HORVU3Hr1G088700.34 , HORVU3Hr1G088700.35 , HORVU3Hr1G088700.2 , HORVU3Hr1G088700.3 , HORVU3Hr1G088700.6 , HORVU3Hr1G088700.7 , HORVU3Hr1G088700.4 , HORVU3Hr1G088700.5 , HORVU3Hr1G088700.8 , HORVU3Hr1G088700.9
Wheat TraesCS3D02G384700 , TraesCS3B02G423800 , TraesCS3A02G391800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
2 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
3 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
4 Sobic.001G398400 expressed protein -
5 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
6 Sobic.006G281400 expressed protein -
7 Sobic.008G070700 leafbladeless1, putative, expressed -
8 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
9 Sobic.004G321400 BRUSHY 1, putative, expressed -
10 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
11 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
12 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
13 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
14 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
15 Sobic.004G307900 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
16 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
17 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
18 Sobic.004G198100 expressed protein -
19 Sobic.007G121600 - -
20 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein


Gene co-expression network
sample Sobic003G393100 Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G393100--Sobic009G184200 Sobic002G204400 Sobic002G204400 Sobic003G393100--Sobic002G204400 Sobic003G369200 Sobic003G369200 Sobic003G393100--Sobic003G369200 Sobic001G398400 Sobic001G398400 Sobic003G393100--Sobic001G398400 Sobic008G148000 Sobic008G148000 Sobic003G393100--Sobic008G148000 Sobic006G281400 Sobic006G281400 Sobic003G393100--Sobic006G281400 Sobic008G070700 Sobic008G070700 Sobic003G393100--Sobic008G070700 Sobic007G007800 Sobic007G007800 Sobic003G393100--Sobic007G007800 Sobic004G321400 Sobic004G321400 Sobic003G393100--Sobic004G321400 Sobic009G184200--Sobic002G204400 Sobic010G105400 Sobic010G105400 Sobic009G184200--Sobic010G105400 Sobic009G184200--Sobic001G398400 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic003G032200 Sobic003G032200 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic002G204400--Sobic009G184200 Sobic002G204400--Sobic008G148000 Sobic002G204400--Sobic003G393100 Sobic002G204400--Sobic010G105400 Sobic002G204400--Sobic006G281400 Sobic005G000500 Sobic005G000500 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic002G204400--Sobic001G398400 Sobic004G271300 Sobic004G271300 Sobic002G204400--Sobic004G271300 Sobic010G147700 Sobic010G147700 Sobic003G369200--Sobic010G147700 Sobic005G110535 Sobic005G110535 Sobic003G369200--Sobic005G110535 Sobic009G087000 Sobic009G087000 Sobic003G369200--Sobic009G087000 Sobic003G201000 Sobic003G201000 Sobic003G369200--Sobic003G201000 Sobic003G369200--Sobic003G393100 Sobic003G369200--Sobic009G184200 Sobic003G183700 Sobic003G183700 Sobic003G369200--Sobic003G183700 Sobic006G029300 Sobic006G029300 Sobic003G369200--Sobic006G029300 Sobic007G168900 Sobic007G168900 Sobic003G369200--Sobic007G168900 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic008G006800 Sobic008G006800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic005G005700 Sobic005G005700 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic004G198100 Sobic004G198100 Sobic001G398400--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic001G398400--Sobic004G257600 Sobic008G148000--Sobic005G000500 Sobic008G148000--Sobic002G204400 Sobic008G148000--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic008G148000--Sobic010G008900 Sobic008G148000--Sobic007G168900 Sobic008G148000--Sobic004G271300 Sobic003G444100 Sobic003G444100 Sobic008G148000--Sobic003G444100 Sobic003G314900 Sobic003G314900 Sobic008G148000--Sobic003G314900 Sobic008G148000--Sobic009G184200 Sobic006G281400--Sobic002G204400 Sobic003G423600 Sobic003G423600 Sobic006G281400--Sobic003G423600 Sobic006G281400--Sobic008G148000 Sobic006G281400--Sobic005G000500 Sobic006G281400--Sobic001G398400 Sobic006G281400--Sobic010G105400 Sobic006G281400--Sobic003G369200 Sobic006G281400--Sobic005G110535 Sobic004G156200 Sobic004G156200 Sobic006G281400--Sobic004G156200 Sobic006G272800 Sobic006G272800 Sobic008G070700--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic008G070700--Sobic002G112000 Sobic004G267600 Sobic004G267600 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic010G222800 Sobic010G222800 Sobic008G070700--Sobic010G222800 Sobic010G092400 Sobic010G092400 Sobic008G070700--Sobic010G092400 Sobic002G317700 Sobic002G317700 Sobic008G070700--Sobic002G317700 Sobic001G175100 Sobic001G175100 Sobic008G070700--Sobic001G175100 Sobic008G070700--Sobic003G393100 Sobic002G272300 Sobic002G272300 Sobic007G007800--Sobic002G272300 Sobic001G105800 Sobic001G105800 Sobic007G007800--Sobic001G105800 Sobic007G007800--Sobic009G184200 Sobic001G013400 Sobic001G013400 Sobic007G007800--Sobic001G013400 Sobic002G223900 Sobic002G223900 Sobic007G007800--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic007G007800--Sobic004G331600 Sobic005G020100 Sobic005G020100 Sobic007G007800--Sobic005G020100 Sobic007G007800--Sobic010G092400 Sobic001G083300 Sobic001G083300 Sobic007G007800--Sobic001G083300 Sobic004G321400--Sobic003G183700 Sobic004G321400--Sobic009G087000 Sobic004G321400--Sobic005G110535 Sobic002G290000 Sobic002G290000 Sobic004G321400--Sobic002G290000 Sobic004G321400--Sobic003G369200 Sobic008G129200 Sobic008G129200 Sobic004G321400--Sobic008G129200 Sobic004G095200 Sobic004G095200 Sobic004G321400--Sobic004G095200 Sobic009G172950 Sobic009G172950 Sobic004G321400--Sobic009G172950 Sobic004G321400--Sobic004G331600
Octagon: transcription factors


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