Gene annotation
Transcriptome id Sobic.002G021200.1
Synonym CHR01, Sb02g001960, SOM1, ATDDM1, DDM1, CHR1, CHA1, SOM4
Functional annotation expressed protein
UniProt C5X8P4
Pfam PF04851 PF00271
Panther DB PTHR10799 PTHR10799:SF606
NCBI CDD KOG1002; Nucleotide excision repair protein RAD16
KEGG Orthology K19001; HELLS, ATP-dependent DNA helicase
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G66750 : chromatin remodeling 1
RAP-DB (Rice) LOC_Os09g27060.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016205 , Zm00025a007945
Brachypodium KQK13471 , KQK13470
Barley -
Wheat TraesCS2A02G368200 , TraesCS2D02G365000 , TraesCS4D02G053600 , TraesCS4D02G053600 , TraesCS2B02G385300 , TraesCS4A02G372200 , TraesCS4D02G051500 , TraesCS7D02G069700 , TraesCS4A02G261000 , TraesCS7A02G074600 , TraesCS4B02G053600 , TraesCS4B02G053600 , TraesCS2B02G385300 , TraesCS2B02G385300 , TraesCS2B02G385300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
2 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
3 Sobic.002G168000 expressed protein -
4 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
5 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
6 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
7 Sobic.003G055600 expressed protein -
8 Sobic.005G157300 protein binding protein, putative, expressed -
9 Sobic.009G077300 protein kinase, putative, expressed -
10 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
11 Sobic.006G221300 expressed protein -
12 Sobic.009G146250 - -
13 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
14 Sobic.009G127800 BZIP protein, putative, expressed -
15 Sobic.005G153000 agenet domain containing protein, expressed -
16 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
17 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
18 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
19 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
20 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G021200 Sobic002G021200 Sobic007G187700 Sobic007G187700 Sobic002G021200--Sobic007G187700 Sobic001G377700 Sobic001G377700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic005G153000 Sobic005G153000 Sobic007G187700--Sobic005G153000 Sobic001G104500 Sobic001G104500 Sobic007G187700--Sobic001G104500 Sobic007G187700--Sobic001G377700 Sobic006G275500 Sobic006G275500 Sobic007G187700--Sobic006G275500 Sobic004G317000 Sobic004G317000 Sobic007G187700--Sobic004G317000 Sobic004G282601 Sobic004G282601 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic002G290000 Sobic002G290000 Sobic001G377700--Sobic002G290000 Sobic001G377700--Sobic002G021200 Sobic003G183700 Sobic003G183700 Sobic001G377700--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic001G377700--Sobic005G157300 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G168000--Sobic002G021200 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic006G016700 Sobic006G016700 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic006G281900--Sobic002G168000 Sobic006G281900--Sobic002G021200 Sobic006G281900--Sobic009G188900 Sobic001G290500 Sobic001G290500 Sobic006G281900--Sobic001G290500 Sobic001G199500 Sobic001G199500 Sobic006G281900--Sobic001G199500 Sobic001G425700 Sobic001G425700 Sobic006G281900--Sobic001G425700 Sobic009G225500 Sobic009G225500 Sobic006G281900--Sobic009G225500 Sobic006G281900--Sobic007G187700 Sobic003G024000 Sobic003G024000 Sobic006G281900--Sobic003G024000 Sobic006G221300 Sobic006G221300 Sobic001G054700--Sobic006G221300 Sobic001G054700--Sobic009G077300 Sobic004G108400 Sobic004G108400 Sobic001G054700--Sobic004G108400 Sobic009G143200 Sobic009G143200 Sobic001G054700--Sobic009G143200 Sobic002G050700 Sobic002G050700 Sobic001G054700--Sobic002G050700 Sobic006G124400 Sobic006G124400 Sobic001G054700--Sobic006G124400 Sobic009G127800 Sobic009G127800 Sobic001G054700--Sobic009G127800 Sobic001G054700--Sobic005G153000 Sobic006G221800 Sobic006G221800 Sobic001G054700--Sobic006G221800 Sobic003G420300 Sobic003G420300 Sobic003G292700--Sobic003G420300 Sobic003G226700 Sobic003G226700 Sobic003G292700--Sobic003G226700 Sobic009G202801 Sobic009G202801 Sobic003G292700--Sobic009G202801 Sobic003G292700--Sobic001G054700 Sobic006G142500 Sobic006G142500 Sobic003G292700--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic003G292700--Sobic003G032200 Sobic003G292700--Sobic001G377700 Sobic003G292700--Sobic002G021200 Sobic008G083500 Sobic008G083500 Sobic003G292700--Sobic008G083500 Sobic003G055600--Sobic001G377700 Sobic003G055600--Sobic005G157300 Sobic003G055600--Sobic009G143200 Sobic003G055600--Sobic003G183700 Sobic004G321400 Sobic004G321400 Sobic003G055600--Sobic004G321400 Sobic009G172950 Sobic009G172950 Sobic003G055600--Sobic009G172950 Sobic003G055600--Sobic002G021200 Sobic003G055600--Sobic005G110535 Sobic007G007800 Sobic007G007800 Sobic003G055600--Sobic007G007800 Sobic005G157300--Sobic009G143200 Sobic005G157300--Sobic003G055600 Sobic005G157300--Sobic003G183700 Sobic005G157300--Sobic001G377700 Sobic005G157300--Sobic001G054700 Sobic005G157300--Sobic006G221300 Sobic005G157300--Sobic007G187700 Sobic005G157300--Sobic009G172950 Sobic005G157300--Sobic009G127800 Sobic009G077300--Sobic005G153000 Sobic009G077300--Sobic006G221300 Sobic009G077300--Sobic001G054700 Sobic005G163400 Sobic005G163400 Sobic009G077300--Sobic005G163400 Sobic009G077300--Sobic002G168000 Sobic009G077300--Sobic002G050700 Sobic009G077300--Sobic004G282601 Sobic009G077300--Sobic009G143200 Sobic009G077300--Sobic007G187700
Octagon: transcription factors


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