Gene annotation
Transcriptome id Sobic.009G146250.1
Synonym -
Functional annotation -
UniProt A0A1Z5R2P9
Pfam PF13962 PF12796
Panther DB PTHR24177 PTHR24177:SF31
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03500 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os06g13120.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
2 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
3 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
4 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
5 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
6 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
7 Sobic.001G304800 expressed protein -
8 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
9 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
10 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
11 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
12 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
13 Sobic.002G168000 expressed protein -
14 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
15 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
16 Sobic.002G218600 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
17 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
18 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
19 Sobic.001G109700 expressed protein K19001: HELLS, ATP-dependent DNA helicase
20 Sobic.005G157300 protein binding protein, putative, expressed -


Gene co-expression network
sample Sobic009G146250 Sobic009G146250 Sobic004G156200 Sobic004G156200 Sobic009G146250--Sobic004G156200 Sobic006G195500 Sobic006G195500 Sobic009G146250--Sobic006G195500 Sobic002G021200 Sobic002G021200 Sobic009G146250--Sobic002G021200 Sobic006G275500 Sobic006G275500 Sobic009G146250--Sobic006G275500 Sobic006G120600 Sobic006G120600 Sobic009G146250--Sobic006G120600 Sobic007G187700 Sobic007G187700 Sobic009G146250--Sobic007G187700 Sobic001G304800 Sobic001G304800 Sobic009G146250--Sobic001G304800 Sobic005G068800 Sobic005G068800 Sobic009G146250--Sobic005G068800 Sobic001G377700 Sobic001G377700 Sobic009G146250--Sobic001G377700 Sobic005G110535 Sobic005G110535 Sobic004G156200--Sobic005G110535 Sobic004G156200--Sobic005G068800 Sobic003G423600 Sobic003G423600 Sobic004G156200--Sobic003G423600 Sobic002G290000 Sobic002G290000 Sobic004G156200--Sobic002G290000 Sobic009G087000 Sobic009G087000 Sobic004G156200--Sobic009G087000 Sobic006G281400 Sobic006G281400 Sobic004G156200--Sobic006G281400 Sobic003G369200 Sobic003G369200 Sobic004G156200--Sobic003G369200 Sobic004G156200--Sobic009G146250 Sobic009G052100 Sobic009G052100 Sobic004G156200--Sobic009G052100 Sobic006G051000 Sobic006G051000 Sobic006G195500--Sobic006G051000 Sobic003G183700 Sobic003G183700 Sobic006G195500--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic006G195500--Sobic010G103700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G195500--Sobic006G120600 Sobic006G196600 Sobic006G196600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic003G179500 Sobic003G179500 Sobic006G195500--Sobic003G179500 Sobic002G021200--Sobic007G187700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic006G016700 Sobic006G016700 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic003G147500 Sobic003G147500 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic008G090000 Sobic008G090000 Sobic006G275500--Sobic008G090000 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic006G275500--Sobic009G146250 Sobic006G120600--Sobic010G103700 Sobic006G120600--Sobic003G183700 Sobic006G120600--Sobic006G195500 Sobic006G120600--Sobic002G290000 Sobic002G303800 Sobic002G303800 Sobic006G120600--Sobic002G303800 Sobic006G120600--Sobic003G179500 Sobic007G125300 Sobic007G125300 Sobic006G120600--Sobic007G125300 Sobic006G120600--Sobic009G087000 Sobic006G120600--Sobic006G051000 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic005G153000 Sobic005G153000 Sobic007G187700--Sobic005G153000 Sobic007G187700--Sobic001G104500 Sobic007G187700--Sobic001G377700 Sobic007G187700--Sobic006G275500 Sobic004G317000 Sobic004G317000 Sobic007G187700--Sobic004G317000 Sobic004G282601 Sobic004G282601 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic002G296000 Sobic002G296000 Sobic001G304800--Sobic002G296000 Sobic002G286700 Sobic002G286700 Sobic001G304800--Sobic002G286700 Sobic008G083500 Sobic008G083500 Sobic001G304800--Sobic008G083500 Sobic009G101100 Sobic009G101100 Sobic001G304800--Sobic009G101100 Sobic006G105600 Sobic006G105600 Sobic001G304800--Sobic006G105600 Sobic007G218100 Sobic007G218100 Sobic001G304800--Sobic007G218100 Sobic003G246800 Sobic003G246800 Sobic001G304800--Sobic003G246800 Sobic001G304800--Sobic009G146250 Sobic006G124400 Sobic006G124400 Sobic001G304800--Sobic006G124400 Sobic001G507000 Sobic001G507000 Sobic005G068800--Sobic001G507000 Sobic005G068800--Sobic004G156200 Sobic004G095200 Sobic004G095200 Sobic005G068800--Sobic004G095200 Sobic005G068800--Sobic006G120600 Sobic005G068800--Sobic009G146250 Sobic005G068800--Sobic006G195500 Sobic005G068800--Sobic003G183700 Sobic005G068800--Sobic002G021200 Sobic005G068800--Sobic009G052100 Sobic001G377700--Sobic002G290000 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic001G377700--Sobic006G195500 Sobic001G377700--Sobic007G187700 Sobic001G377700--Sobic007G125300 Sobic001G377700--Sobic005G157300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.