Gene annotation
Transcriptome id Sobic.001G109700.1
Synonym CHR01, SOM1, ATDDM1, Sb01g009790, DDM1, CHR1, CHA1, SOM4
Functional annotation expressed protein
UniProt C5WMX0
Pfam PF04851 PF00271
Panther DB PTHR10799 PTHR10799:SF606
NCBI CDD KOG1001; Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily KOG1002Nucleotide excision repair protein RAD16
KEGG Orthology K19001; HELLS, ATP-dependent DNA helicase
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G66750 : chromatin remodeling 1
RAP-DB (Rice) LOC_Os09g27060.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016205 , Zm00025a007945
Brachypodium KQK13471 , KQK13470
Barley -
Wheat TraesCS2A02G368200 , TraesCS4B02G051400 , TraesCS2D02G365000 , TraesCS4D02G053600 , TraesCS4D02G053600 , TraesCS4A02G263400 , TraesCS2B02G385300 , TraesCS4A02G372200 , TraesCS7D02G069700 , TraesCS4A02G261000 , TraesCS7A02G074600 , TraesCS4B02G053600 , TraesCS4B02G053600 , TraesCS2B02G385300 , TraesCS2B02G385300 , TraesCS2B02G385300
Populus PNS91786 , PNT26762 , PNS91785


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G043900 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
2 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
3 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
4 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
5 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
6 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
7 Sobic.001G304800 expressed protein -
8 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
9 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
10 Sobic.009G146250 - -
11 Sobic.003G008700 MYB family transcription factor, putative, expressed -
12 Sobic.003G118100 EMB3013, putative, expressed K17545: serine/threonine-protein kinase ULK4
13 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
14 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
15 Sobic.004G095200 Peptidase family C50, putative, expressed K02365: separase
16 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
17 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
18 Sobic.004G053900 expressed protein -
19 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
20 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3


Gene co-expression network
sample Sobic001G109700 Sobic001G109700 Sobic003G043900 Sobic003G043900 Sobic001G109700--Sobic003G043900 Sobic007G125300 Sobic007G125300 Sobic001G109700--Sobic007G125300 Sobic005G110535 Sobic005G110535 Sobic001G109700--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic001G109700--Sobic008G148000 Sobic002G296000 Sobic002G296000 Sobic001G109700--Sobic002G296000 Sobic005G000500 Sobic005G000500 Sobic001G109700--Sobic005G000500 Sobic001G304800 Sobic001G304800 Sobic001G109700--Sobic001G304800 Sobic004G156200 Sobic004G156200 Sobic001G109700--Sobic004G156200 Sobic002G290000 Sobic002G290000 Sobic001G109700--Sobic002G290000 Sobic003G043900--Sobic001G109700 Sobic003G043900--Sobic002G296000 Sobic003G043900--Sobic007G125300 Sobic003G043900--Sobic001G304800 Sobic003G043900--Sobic005G110535 Sobic009G146250 Sobic009G146250 Sobic003G043900--Sobic009G146250 Sobic003G008700 Sobic003G008700 Sobic003G043900--Sobic003G008700 Sobic003G043900--Sobic004G156200 Sobic009G101100 Sobic009G101100 Sobic003G043900--Sobic009G101100 Sobic007G125300--Sobic002G290000 Sobic007G125300--Sobic005G110535 Sobic007G125300--Sobic008G148000 Sobic004G053900 Sobic004G053900 Sobic007G125300--Sobic004G053900 Sobic007G125300--Sobic001G109700 Sobic001G377700 Sobic001G377700 Sobic007G125300--Sobic001G377700 Sobic002G204400 Sobic002G204400 Sobic007G125300--Sobic002G204400 Sobic003G118100 Sobic003G118100 Sobic007G125300--Sobic003G118100 Sobic002G113400 Sobic002G113400 Sobic007G125300--Sobic002G113400 Sobic005G110535--Sobic002G290000 Sobic009G087000 Sobic009G087000 Sobic005G110535--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic005G110535--Sobic010G147700 Sobic008G129200 Sobic008G129200 Sobic005G110535--Sobic008G129200 Sobic003G183700 Sobic003G183700 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic008G148000--Sobic005G000500 Sobic008G148000--Sobic002G204400 Sobic001G170800 Sobic001G170800 Sobic008G148000--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic008G148000--Sobic010G008900 Sobic007G168900 Sobic007G168900 Sobic008G148000--Sobic007G168900 Sobic004G271300 Sobic004G271300 Sobic008G148000--Sobic004G271300 Sobic003G444100 Sobic003G444100 Sobic008G148000--Sobic003G444100 Sobic003G314900 Sobic003G314900 Sobic008G148000--Sobic003G314900 Sobic009G184200 Sobic009G184200 Sobic008G148000--Sobic009G184200 Sobic007G027900 Sobic007G027900 Sobic002G296000--Sobic007G027900 Sobic006G124400 Sobic006G124400 Sobic002G296000--Sobic006G124400 Sobic002G296000--Sobic009G101100 Sobic002G296000--Sobic007G168900 Sobic005G005700 Sobic005G005700 Sobic002G296000--Sobic005G005700 Sobic008G006800 Sobic008G006800 Sobic002G296000--Sobic008G006800 Sobic002G296000--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic002G296000--Sobic010G017400 Sobic008G083500 Sobic008G083500 Sobic002G296000--Sobic008G083500 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic005G000500--Sobic008G148000 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic001G177900 Sobic001G177900 Sobic005G000500--Sobic001G177900 Sobic001G304800--Sobic002G296000 Sobic002G286700 Sobic002G286700 Sobic001G304800--Sobic002G286700 Sobic001G304800--Sobic008G083500 Sobic001G304800--Sobic009G101100 Sobic006G105600 Sobic006G105600 Sobic001G304800--Sobic006G105600 Sobic007G218100 Sobic007G218100 Sobic001G304800--Sobic007G218100 Sobic003G246800 Sobic003G246800 Sobic001G304800--Sobic003G246800 Sobic001G304800--Sobic009G146250 Sobic001G304800--Sobic006G124400 Sobic004G156200--Sobic005G110535 Sobic005G068800 Sobic005G068800 Sobic004G156200--Sobic005G068800 Sobic003G423600 Sobic003G423600 Sobic004G156200--Sobic003G423600 Sobic004G156200--Sobic002G290000 Sobic004G156200--Sobic009G087000 Sobic006G281400 Sobic006G281400 Sobic004G156200--Sobic006G281400 Sobic004G156200--Sobic003G369200 Sobic004G156200--Sobic009G146250 Sobic009G052100 Sobic009G052100 Sobic004G156200--Sobic009G052100 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic002G290000--Sobic009G087000 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G290000--Sobic002G113400 Sobic002G290000--Sobic008G129200 Sobic002G290000--Sobic004G053900
Octagon: transcription factors


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