Gene annotation
Transcriptome id Sobic.007G125300.1
Synonym Sb07g020200
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt C5YKV1
Pfam PF13639 PF12738
Panther DB PTHR13561 PTHR13561:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G67180 : zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
RAP-DB (Rice) LOC_Os08g31930.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006080 , Zm00025a031029
Brachypodium KQJ98265
Barley HORVU1Hr1G003740.9 , HORVU1Hr1G003740.8 , HORVU1Hr1G003740.1 , HORVU1Hr1G003740.3 , HORVU1Hr1G003740.2 , HORVU1Hr1G003740.5 , HORVU1Hr1G003740.4 , HORVU1Hr1G003740.7 , HORVU3Hr1G014810.1 , HORVU1Hr1G003740.11 , HORVU1Hr1G003740.10 , HORVU1Hr1G003740.12
Wheat TraesCS1D02G026100 , TraesCS1A02G025700 , TraesCS1B02G032600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
2 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
3 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
4 Sobic.004G053900 expressed protein -
5 Sobic.001G109700 expressed protein K19001: HELLS, ATP-dependent DNA helicase
6 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
7 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
8 Sobic.003G118100 EMB3013, putative, expressed K17545: serine/threonine-protein kinase ULK4
9 Sobic.002G113400 dnaJ domain containing protein, expressed -
10 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
11 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
12 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
13 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
14 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
15 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
16 Sobic.003G423600 expressed protein K06228: fused
17 Sobic.006G179200 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
18 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
19 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
20 Sobic.006G281400 expressed protein -


Gene co-expression network
sample Sobic007G125300 Sobic007G125300 Sobic002G290000 Sobic002G290000 Sobic007G125300--Sobic002G290000 Sobic005G110535 Sobic005G110535 Sobic007G125300--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic007G125300--Sobic008G148000 Sobic004G053900 Sobic004G053900 Sobic007G125300--Sobic004G053900 Sobic001G109700 Sobic001G109700 Sobic007G125300--Sobic001G109700 Sobic001G377700 Sobic001G377700 Sobic007G125300--Sobic001G377700 Sobic002G204400 Sobic002G204400 Sobic007G125300--Sobic002G204400 Sobic003G118100 Sobic003G118100 Sobic007G125300--Sobic003G118100 Sobic002G113400 Sobic002G113400 Sobic007G125300--Sobic002G113400 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic002G290000--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G290000--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic002G290000--Sobic008G129200 Sobic002G290000--Sobic004G053900 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic003G183700 Sobic003G183700 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic005G000500 Sobic005G000500 Sobic008G148000--Sobic005G000500 Sobic008G148000--Sobic002G204400 Sobic001G170800 Sobic001G170800 Sobic008G148000--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic008G148000--Sobic010G008900 Sobic007G168900 Sobic007G168900 Sobic008G148000--Sobic007G168900 Sobic004G271300 Sobic004G271300 Sobic008G148000--Sobic004G271300 Sobic003G444100 Sobic003G444100 Sobic008G148000--Sobic003G444100 Sobic003G314900 Sobic003G314900 Sobic008G148000--Sobic003G314900 Sobic009G184200 Sobic009G184200 Sobic008G148000--Sobic009G184200 Sobic004G053900--Sobic002G113400 Sobic002G297500 Sobic002G297500 Sobic004G053900--Sobic002G297500 Sobic004G053900--Sobic002G290000 Sobic004G053900--Sobic007G125300 Sobic004G053900--Sobic008G148000 Sobic004G053900--Sobic005G110535 Sobic010G051100 Sobic010G051100 Sobic004G053900--Sobic010G051100 Sobic006G179200 Sobic006G179200 Sobic004G053900--Sobic006G179200 Sobic004G328300 Sobic004G328300 Sobic004G053900--Sobic004G328300 Sobic003G043900 Sobic003G043900 Sobic001G109700--Sobic003G043900 Sobic001G109700--Sobic007G125300 Sobic001G109700--Sobic005G110535 Sobic001G109700--Sobic008G148000 Sobic002G296000 Sobic002G296000 Sobic001G109700--Sobic002G296000 Sobic001G109700--Sobic005G000500 Sobic001G304800 Sobic001G304800 Sobic001G109700--Sobic001G304800 Sobic004G156200 Sobic004G156200 Sobic001G109700--Sobic004G156200 Sobic001G109700--Sobic002G290000 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic003G055600 Sobic003G055600 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic007G187700 Sobic007G187700 Sobic001G377700--Sobic007G187700 Sobic001G377700--Sobic007G125300 Sobic005G157300 Sobic005G157300 Sobic001G377700--Sobic005G157300 Sobic002G204400--Sobic009G184200 Sobic002G204400--Sobic008G148000 Sobic003G393100 Sobic003G393100 Sobic002G204400--Sobic003G393100 Sobic010G105400 Sobic010G105400 Sobic002G204400--Sobic010G105400 Sobic006G281400 Sobic006G281400 Sobic002G204400--Sobic006G281400 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic001G398400 Sobic001G398400 Sobic002G204400--Sobic001G398400 Sobic002G204400--Sobic004G271300 Sobic006G035600 Sobic006G035600 Sobic003G118100--Sobic006G035600 Sobic002G191000 Sobic002G191000 Sobic003G118100--Sobic002G191000 Sobic003G118100--Sobic010G008900 Sobic003G118100--Sobic008G148000 Sobic003G118100--Sobic005G000500 Sobic003G118100--Sobic007G125300 Sobic001G131300 Sobic001G131300 Sobic003G118100--Sobic001G131300 Sobic003G294500 Sobic003G294500 Sobic003G118100--Sobic003G294500 Sobic001G029800 Sobic001G029800 Sobic003G118100--Sobic001G029800 Sobic002G113400--Sobic004G053900 Sobic001G025900 Sobic001G025900 Sobic002G113400--Sobic001G025900 Sobic002G113400--Sobic002G297500 Sobic002G113400--Sobic002G290000 Sobic002G113400--Sobic001G013400 Sobic002G113400--Sobic008G148000 Sobic002G113400--Sobic005G110535 Sobic002G113400--Sobic007G125300 Sobic002G113400--Sobic010G051100
Octagon: transcription factors


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