Gene annotation
Transcriptome id Sobic.006G281400.1,Sobic.006G281400.2
Synonym Sb06g034160, CHR24
Functional annotation expressed protein
UniProt A0A1B6PPE1 , A0A1B6PP52
Pfam PF04851 PF00271
Panther DB PTHR10799 PTHR10799:SF726
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G63950 : chromatin remodeling 24
RAP-DB (Rice) LOC_Os04g59624.2 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057437 , Zm00025a057462 , Zm00025a010580
Brachypodium PNT62242 , KQJ85522 , KQJ85521
Barley HORVU2Hr1G127340.7 , HORVU2Hr1G127340.6 , HORVU2Hr1G127340.5 , HORVU2Hr1G127340.4 , HORVU2Hr1G127340.3 , HORVU2Hr1G127340.2 , HORVU2Hr1G127340.1 , HORVU2Hr1G127340.9 , HORVU2Hr1G127340.8 , HORVU2Hr1G127340.15 , HORVU2Hr1G127340.14 , HORVU2Hr1G127340.13 , HORVU2Hr1G127340.12 , HORVU2Hr1G127340.11 , HORVU2Hr1G127340.10
Wheat TraesCS2A02G561600 , TraesCS1D02G263000 , TraesCS6D02G107800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
2 Sobic.003G423600 expressed protein K06228: fused
3 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
4 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
5 Sobic.001G398400 expressed protein -
6 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
7 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
8 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
9 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
10 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
11 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
12 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
13 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
14 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
15 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
16 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
17 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
18 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
19 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
20 Sobic.001G477400 AUXIN SIGNALING F-BOX 2, putative, expressed -


Gene co-expression network
sample Sobic006G281400 Sobic006G281400 Sobic002G204400 Sobic002G204400 Sobic006G281400--Sobic002G204400 Sobic003G423600 Sobic003G423600 Sobic006G281400--Sobic003G423600 Sobic008G148000 Sobic008G148000 Sobic006G281400--Sobic008G148000 Sobic005G000500 Sobic005G000500 Sobic006G281400--Sobic005G000500 Sobic001G398400 Sobic001G398400 Sobic006G281400--Sobic001G398400 Sobic010G105400 Sobic010G105400 Sobic006G281400--Sobic010G105400 Sobic003G369200 Sobic003G369200 Sobic006G281400--Sobic003G369200 Sobic005G110535 Sobic005G110535 Sobic006G281400--Sobic005G110535 Sobic004G156200 Sobic004G156200 Sobic006G281400--Sobic004G156200 Sobic009G184200 Sobic009G184200 Sobic002G204400--Sobic009G184200 Sobic002G204400--Sobic008G148000 Sobic003G393100 Sobic003G393100 Sobic002G204400--Sobic003G393100 Sobic002G204400--Sobic010G105400 Sobic002G204400--Sobic006G281400 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic002G204400--Sobic001G398400 Sobic004G271300 Sobic004G271300 Sobic002G204400--Sobic004G271300 Sobic003G423600--Sobic006G281400 Sobic003G423600--Sobic008G148000 Sobic003G423600--Sobic005G000500 Sobic003G423600--Sobic004G156200 Sobic003G423600--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic003G423600--Sobic002G296000 Sobic003G423600--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic003G423600--Sobic007G168900 Sobic003G423600--Sobic005G110535 Sobic008G148000--Sobic005G000500 Sobic008G148000--Sobic002G204400 Sobic001G170800 Sobic001G170800 Sobic008G148000--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic008G148000--Sobic010G008900 Sobic008G148000--Sobic007G168900 Sobic008G148000--Sobic004G271300 Sobic003G444100 Sobic003G444100 Sobic008G148000--Sobic003G444100 Sobic003G314900 Sobic003G314900 Sobic008G148000--Sobic003G314900 Sobic008G148000--Sobic009G184200 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic005G000500--Sobic008G148000 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic001G177900 Sobic001G177900 Sobic005G000500--Sobic001G177900 Sobic003G260700 Sobic003G260700 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic008G006800 Sobic008G006800 Sobic001G398400--Sobic008G006800 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic005G005700 Sobic005G005700 Sobic001G398400--Sobic005G005700 Sobic001G398400--Sobic010G105400 Sobic004G198100 Sobic004G198100 Sobic001G398400--Sobic004G198100 Sobic004G257600 Sobic004G257600 Sobic001G398400--Sobic004G257600 Sobic010G105400--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic010G105400--Sobic004G047100 Sobic010G105400--Sobic009G184200 Sobic010G105400--Sobic005G000500 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic010G105400--Sobic007G168900 Sobic010G105400--Sobic002G204400 Sobic010G147700 Sobic010G147700 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic009G087000 Sobic009G087000 Sobic003G369200--Sobic009G087000 Sobic003G201000 Sobic003G201000 Sobic003G369200--Sobic003G201000 Sobic003G369200--Sobic003G393100 Sobic003G369200--Sobic009G184200 Sobic003G183700 Sobic003G183700 Sobic003G369200--Sobic003G183700 Sobic006G029300 Sobic006G029300 Sobic003G369200--Sobic006G029300 Sobic003G369200--Sobic007G168900 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic008G129200 Sobic008G129200 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic004G156200--Sobic005G110535 Sobic005G068800 Sobic005G068800 Sobic004G156200--Sobic005G068800 Sobic004G156200--Sobic003G423600 Sobic004G156200--Sobic002G290000 Sobic004G156200--Sobic009G087000 Sobic004G156200--Sobic006G281400 Sobic004G156200--Sobic003G369200 Sobic009G146250 Sobic009G146250 Sobic004G156200--Sobic009G146250 Sobic009G052100 Sobic009G052100 Sobic004G156200--Sobic009G052100
Octagon: transcription factors


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