Gene annotation
Transcriptome id Sobic.010G147700.1
Synonym Sb10g019730
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A194YKD9
Pfam PF00400 PF12341
Panther DB PTHR19932 PTHR19932:SF10
NCBI CDD -
KEGG Orthology K11274; WDHD1, chromosome transmission fidelity protein 4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G42660 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os09g06560.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046164
Brachypodium KQK05140
Barley HORVU5Hr1G060480.8 , HORVU5Hr1G060480.1 , HORVU5Hr1G060480.3 , HORVU5Hr1G060480.2 , HORVU5Hr1G060480.5 , HORVU5Hr1G060480.4 , HORVU5Hr1G060480.7 , HORVU5Hr1G060480.6 , HORVU5Hr1G060480.10
Wheat TraesCS5B02G163900 , TraesCS5A02G166800 , TraesCS5D02G171100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
4 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
5 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
6 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
7 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
8 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
9 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
11 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
12 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
13 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
14 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
15 Sobic.003G294500 dynamin family protein, putative, expressed -
16 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
17 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
19 Sobic.002G272300 expressed protein -
20 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3


Gene co-expression network
sample Sobic010G147700 Sobic010G147700 Sobic006G029300 Sobic006G029300 Sobic010G147700--Sobic006G029300 Sobic009G087000 Sobic009G087000 Sobic010G147700--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic010G147700--Sobic005G110535 Sobic003G369200 Sobic003G369200 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic008G129200 Sobic008G129200 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic003G183700 Sobic003G183700 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic006G029300--Sobic010G147700 Sobic006G029300--Sobic009G087000 Sobic006G029300--Sobic007G168900 Sobic006G029300--Sobic003G369200 Sobic003G294500 Sobic003G294500 Sobic006G029300--Sobic003G294500 Sobic006G029300--Sobic003G201000 Sobic001G029800 Sobic001G029800 Sobic006G029300--Sobic001G029800 Sobic006G029300--Sobic005G144600 Sobic006G029300--Sobic005G110535 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic003G369200--Sobic009G087000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G369200--Sobic003G183700 Sobic003G369200--Sobic006G029300 Sobic003G369200--Sobic007G168900 Sobic005G000500 Sobic005G000500 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic004G271300 Sobic004G271300 Sobic007G168900--Sobic004G271300 Sobic001G177900 Sobic001G177900 Sobic007G168900--Sobic001G177900 Sobic003G314900 Sobic003G314900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic003G260700 Sobic003G260700 Sobic007G168900--Sobic003G260700 Sobic010G008900 Sobic010G008900 Sobic007G168900--Sobic010G008900 Sobic007G168900--Sobic010G147700 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500 Sobic005G144600--Sobic007G168900 Sobic010G105400 Sobic010G105400 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic005G144600--Sobic004G271300 Sobic005G144600--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic003G201000--Sobic010G147700 Sobic003G201000--Sobic003G369200 Sobic003G201000--Sobic009G087000 Sobic003G444300 Sobic003G444300 Sobic003G201000--Sobic003G444300 Sobic003G201000--Sobic005G144600 Sobic003G201000--Sobic010G054600 Sobic003G201000--Sobic006G029300 Sobic003G201000--Sobic002G290000 Sobic003G201000--Sobic005G110535
Octagon: transcription factors


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